Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq7115 165 3e-36 >seq7115 Length=2623 Score = 165 bits (182), Expect = 3e-36 Identities = 502/761 (66%), Gaps = 16/761 (2%) Strand=Plus/Minus Query 15339 TTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCCCAAATAATGCAGCCG-TCCAC 15397 ||||||||||| | ||||| || ||||||||||| ||||| | | ||| || ||||| Sbjct 784 TTTGGGCAAGGTCTACCAATTGTCGCGCAAACCATATCCCACAACA-GCACCCCATCCAC 726 Query 15398 CAGTTCTTGCCGTGTAATGATCTCGGTGGAAAGGCGCGTGTGGATACCCGACCATGCGTT 15457 | | | ||| | ||| || || | | ||| || ||||| || |||||||| ||||| Sbjct 725 TCGCTGGTTCCGCGCAATCATTTCAGCGCTAAGACGTGTGTGAATGCCCGACCAAGCGTT 666 Query 15458 ATGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCCAAACGATGAATTCATTTGCATT 15517 | || ||||| || ||||| | |||| ||||| | | || |||| || Sbjct 665 TCGTTGAGGATCTGCACCAGGATTGGAACAGATACTCCAGATCACAAACTCATCAGCGAG 606 Query 15518 CGCCGGACGCTGAAAGATGTTCGTGTTGTTGCCATCCAAGCAACCCTTTAGCTCGATGAC 15577 | ||| || | ||| || |||||||| || ||||| | || ||||| || || || || Sbjct 605 TGGCGGTCGTTCAAAAATATTCGTGTTATTCCCATCAAGACAGCCCTTAAGGTCAATAAC 546 Query 15578 AGCGACACGATCTG-ATGGAAGCGTCACGGAATAATCGTGCCGGTTGGC-TTCGCCGGAT 15635 ||| |||| | || | || || |||||| | ||||| || || | | Sbjct 545 AGCAGCACGTCCACTATTTAGACGA-ACAATATAATCATTACGGTTTGCATTATCTGTCA 487 Query 15636 GACTCCCACTCTTTGATGAAGTGGTTATCCTGCATATAGTTTAGGACGCGCTGAACAAAC 15695 || ||||| | || || | || | ||||| || || | ||||||||||| Sbjct 486 GA-TCCCATCCAGCAATAAAACCGCCGTCTTCCATATGATTCAGCGCATGCTGAACAAAC 428 Query 15696 TCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCGAATGCGTTCGATAGCGCCCCGA 15755 || || || ||||||| || || || |||||||| || | || || || ||||| ||| Sbjct 427 TCTCGTTTGCCACGCATAGTGGCCGAAAACTGGCCACGGACACGCTCTATCGCGCCACGA 368 Query 15756 AACACGCCACTATTATAGAATTC-CGCTTCGCCTAAGCCGTGAAGGCCGAGCTTATGGCC 15814 |||| ||| | ||| || || ||| || | || || || ||| || ||||| | Sbjct 367 AACAAACCAGACTGATATAACTCTCGC-TCATCCAAACCATGGTCGCCAAGTTTATGCGC 309 Query 15815 TTCAGCCTTCAGCACATCTGAATACTCTTCGATCTTTTTCCGCAATTCAGCGTTCTGCTC 15874 ||| | || || || | | || ||||| | | |||||| | |||||| | Sbjct 308 TTCTGTTTTAAGTGTTTCAGCAAACCTCTCGATTTGATCGCGCAATCCCTTGTTCTGTTT 249 Query 15875 GCACGGAATGATATTCATGCGGCGACCT-TTGCCGACGTT-GGA----CTTCCAAGAATT 15928 || ||||| || |||||| || ||| || || | || ||| | ||||| | Sbjct 248 ACAGGGAATAATGGTCATGCCGCTTCCTGTTTCC--CTTTCGGAAACCATGCCAAGTAAC 191 Query 15929 CGCTCAAAAAGATGATGAGCCAAATGGCGGACTACGGGAACGACCACACCATCGCCGGTC 15988 | || | | ||| || |||| ||| || || || || || | || ||||| || ||| Sbjct 190 GGTTCCAGGATATGCTGCGCCAGATGACGAACGACAGGCACAGCTACGCCATCCCCTGTC 131 Query 15989 AGGTGGTACGCCTCGTTGTAGTTCTCAGGGAGCTTGTAATCGTCAGGCAAGCCCATGAGG 16048 ||||| || || || || || |||| ||| |||||||||| || | ||||| || Sbjct 130 AGGTGATAAGCTTCATTATAATTCTTAGGCAGCTTGTAATGATCTCCGAGCCCCATCAGC 71 Query 16049 CGCGCCGTTTCGCGACTAGATATCAGGCGAGAGCGAACCTT 16089 | || ||||| ||| | || || || || || |||||||| Sbjct 70 CTTGCTGTTTCACGAGTGGAGATTAGCCGCGACCGAACCTT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185636083511706