Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 109 4e-19
seq5502 107 2e-18
>seq22190
Length=927835
Score = 109 bits (120), Expect = 4e-19
Identities = 151/210 (72%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || |||||||| || || || || ||||| |||| | || | | || |||
Sbjct 837505 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCC 837446
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || ||||| ||||||||||| || || || ||||||||||| || || ||
Sbjct 837445 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 837386
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| || || | || | || || || | || || ||||| |||| || |||
Sbjct 837385 ATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTGATGGTCTTG 837327
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | ||| || ||||| |||||||||
Sbjct 837326 CCAGTGAGAGTCTTGACAAAGATCTGCATG 837297
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | || || || || || || ||||| |||| | || | | || |||
Sbjct 837733 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCC 837674
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || ||||| ||||||||||| || || || ||||||||||| || || ||
Sbjct 837673 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 837614
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| || || | || | || || || | || || ||||| |||| || |||
Sbjct 837613 ATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 837554
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | ||| || ||||| |||||||||
Sbjct 837553 CCAGTGAGAGTCTTGACAAAGATCTGCATG 837524
>seq5502
Length=68615
Score = 107 bits (118), Expect = 2e-18
Identities = 169/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||| | | ||| | || || || | || || || || || || || |||||||
Sbjct 5818 TTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGG 5877
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
| ||| | |||| ||||| ||||| || || || ||||||||||| ||||| || |
Sbjct 5878 ACAGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 5937
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
|||| || || || || || || || || || | || | || ||||| | ||| |
Sbjct 5938 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGA 5997
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480
|||| | |||| ||||| ||||| || || ||||| || || |||||| ||||||
Sbjct 5998 CTTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCATGCCACCGCGAA 6057
Query 101481 GA 101482
||
Sbjct 6058 GA 6059
Score = 102 bits (112), Expect = 6e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| || |||||||| ||||| || || || ||||| || | | || | | |||| ||
Sbjct 6293 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTC 6352
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||||||| || || || || | ||| || ||||| || || ||||| || || || ||
Sbjct 6353 CAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTG 6412
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || || ||| |||| | ||||| || | || || || || || | || ||
Sbjct 6413 GATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTCTT 6472
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||| || | || ||||| || |||||||||
Sbjct 6473 GCCAGTCAGGGTCTTTACGAAGATCTGCATG 6503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396168192376383
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |