Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq19428 125 1e-23 >seq19428 Length=669826 Score = 125 bits (138), Expect = 1e-23 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 197041 CCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCGGGATTGTAACAGGCGAGT 197100 || || || || ||||||||| || ||| || ||| |||| || || || || || Sbjct 43457 CCTGTTCCAATTTTACAAATGCTTTGATACTCCTCGTTTTCGGTATCATAGCAAGCAAGC 43516 Query 197101 AAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAACCACC 197160 || || | || |||||||| |||| ||| || ||| |||| || || || || Sbjct 43517 AAAAATCCACCATAGGTTCCAGTTCGTCGACCCTTTCCTTTGTAGCCGCCAATCACTACT 43576 Query 197161 AGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCTTCTA 197220 |||||||| | ||||| ||| |||||||| |||||||| || | ||| |||| Sbjct 43577 AGATCCAGTGAGTCGCCCACATTGGATATGTAATCCTTCTTCAGCTTTAACCAATTTCTG 43636 Query 197221 GATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATCAATCCCTCG 197280 ||||||||||||||||| ||||| || | |||| || ||||| | ||| | |||||| Sbjct 43637 GATCTCTTGGCAATCTCATAGGTGGCCTCCTCGTCAAGAGTCTTCACCATAAGACCCTCG 43696 Query 197281 CAAT 197284 |||| Sbjct 43697 CAAT 43700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676536571340720