Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq22465 183 2e-41
seq5502 111 1e-19
seq22266 98.7 8e-16
seq22190 82.4 6e-11
>seq22465
Length=63631
Score = 183 bits (202), Expect = 2e-41
Identities = 278/393 (71%), Gaps = 2/393 (1%)
Strand=Plus/Minus
Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACCTCTAC 9059
|| || || || || |||||||| ||||| | |||||| || | || ||| |
Sbjct 17490 CCCGTGGAACCGAATCCTCCCTCGCCGCGTTCGGTGTCC-TCCAGTTTGTCGACCAGCTC 17432
Query 9060 CAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCAC 9119
|||| ||||| ||||| | || ||||| |||||||| || | ||| || |||||
Sbjct 17431 CAGTTCCGGATAGAAGATGCGCTCGCAAATGAATTGAGCGATGCGGTCGCCGCGCTTCAC 17372
Query 9120 GACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTC 9179
|||| || ||| || ||||||||||| || || || | ||| || | |||||||||
Sbjct 17371 CTCAAACTCCACGTCCGAGTGATTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTC 17312
Query 9180 ATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239
||| | |||||| || ||||| |||||||||| ||| || || ||||| || || || ||
Sbjct 17311 ATCCACCACACCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGC 17252
Query 9240 GATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTT 9299
| || |||||| | ||| |||| | |||||| ||| ||||||| | || | ||||
Sbjct 17251 CACACGGCCGTAGGAGCCCTCCGGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCCTT 17192
Query 9300 GCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTC 9359
|| | |||| ||| ||||||| ||||| || |||| || || ||| || |
Sbjct 17191 TCCCCGGGCCGGAACCACCAGGTCGTAGGCGCTCCGCAGGTCAACTCCCGCCGCCTTGGC 17132
Query 9360 CGATCCCTTCGTGGGCGCAAAAGCGTTTTCGGT 9392
|||||| || ||| | ||||| ||||||||
Sbjct 17131 AGATCCCCTCACCGGCTCCAAAGCATTTTCGGT 17099
>seq5502
Length=68615
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| || || || || ||||| || || || |||| | || ||
Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| |||||||| ||||| ||||| || || | ||||| ||||||||| || |
Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 7325
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| |||||| | | | || || | ||||||||||| ||||| || ||
Sbjct 7326 ATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTG 7385
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || ||||| ||||||||
Sbjct 7386 CCAGTCAATGTCTTCACAAAGATCTGCAT 7414
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || || ||| ||||| || ||||||||||| | | ||
Sbjct 6741 AGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGT 6800
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| ||||| |||||||| || | |||||| ||||| | ||||| ||||||
Sbjct 6801 CCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCC 6860
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||| | |||
Sbjct 6861 TTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTA 6920
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| || || || || || |||||
Sbjct 6921 ATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| || || || || ||||| || || || |||| | || ||
Sbjct 6066 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 6125
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| |||||||| ||||| ||||| ||||| | ||||| |||||||||||
Sbjct 6126 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6185
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||||||||| | ||||| |||||
Sbjct 6186 ATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTG 6245
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| || || || || || |||||
Sbjct 6246 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || | ||| ||| || || || || ||||| || ||| | ||
Sbjct 5829 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGT 5888
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| ||||| || |||| ||||| ||||| | ||||| ||||||
Sbjct 5889 CCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 5948
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | || || |||| ||
Sbjct 5949 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTG 6008
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| ||||| || ||||| || || |||||
Sbjct 6009 ATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| || || || || ||||| || || || | || | || |||
Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|||||||| || || || || || ||||| ||||| | ||||| |||||||| || |
Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 6641
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | |||||| || | || || ||||||
Sbjct 6642 ATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTTT 6701
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || ||||| || || |||||
Sbjct 6702 CCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
>seq22266
Length=384576
Score = 98.7 bits (108), Expect = 8e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| ||| || || ||| || || || ||||| || || || | ||
Sbjct 109166 AGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 109225
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| |||||||
Sbjct 109226 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 109285
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||||||||||| ||
Sbjct 109286 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 109345
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| || || || || | ||||| || ||||| ||||| |||
Sbjct 109346 ATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATGGTG 109387
>seq22190
Length=927835
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || || ||| || || || ||||| || || | | ||
Sbjct 837287 AGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 837228
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||| || ||||| || |||| |||||| || || | ||||| ||||||
Sbjct 837227 CCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCC 837168
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 837167 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTG 837108
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||||||| || |||||||| |||||
Sbjct 837107 ATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCAT 837070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380831658753537
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