Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq22136 185 2e-41
seq8502 161 2e-34
seq1813 161 2e-34
seq8501 158 2e-33
>seq22136
Length=515022
Score = 185 bits (204), Expect = 2e-41
Identities = 537/821 (65%), Gaps = 25/821 (3%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571
|||||| | || ||| |||| ||| |||||||| || || |||| | ||| |||
Sbjct 290440 CTGGACTGTGGAGGAGGTTGACCTGTCCAAGGACTTGACCGACTGGCATCGTCT---CAA 290384
Query 25572 AGACGAGCAGCATT--TTC-TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTAT 25628
||||| ||| | ||| || | ||||| |||| ||||| || ||||| ||||| ||
Sbjct 290383 GGACGATGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCAT 290324
Query 25629 AGTGAACGAGAATCT-GTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGT 25687
|| || ||||| || ||| ||| | |||| ||| |||||| | ||||||| |
Sbjct 290323 TGTTAATGAGAACCTCGTG-GAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCCCGCT 290265
Query 25688 GTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTC 25747
| |||||||| |||||||| ||||| || || |||||||| ||| |||| || | |
Sbjct 290264 GCTTCTACGGATTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGCGTGC 290208
Query 25748 TGATGACGTACA-TTACAGACGT----CGC-CGAGAGAGATCGGCTGTTTGGTGCCATCG 25801
|||| || ||| ||||| || ||| | || |||| ||||| |||||||
Sbjct 290207 TGAT--CG-ACACTTACATCCGGGATCCGCACCAGCGAGACTATCTGTTCAACGCCATCG 290151
Query 25802 AGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG 25860
|| || || ||| | ||| | |||||| |||||| || |||||| | | ||
Sbjct 290150 AGACGATGCC-AGCGGTGAAGCGCAAGGCGGACTGGGCCCTGTCCTGGATCTCCTCCAAG 290092
Query 25861 AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGC 25920
||| | || || ||||| | | |||||||| || |||||||||||||| ||||||
Sbjct 290091 TCCGCCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGC 290032
Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980
|| || || |||| |||||||| ||| | || ||||| || ||| |||
Sbjct 290031 GGCAGTTTCGCCTCCATTTTCTGGCTAAAGAAACGCGGTTTGATGCCGGGCCTGACCTTC 289972
Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
|||||||| || ||| | |||||||||| | ||| | || || ||| ||| | | |
Sbjct 289971 TCCAACGAACTGATCTCCCGGGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTC 289912
Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100
| || || | || ||| | ||| | || | |||||| || ||
Sbjct 289911 CAG---CATCTGGTTCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGTGATGCG 289855
Query 26101 GTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAAC 26160
|||| || ||| ||||||| | | |||||||||
Sbjct 289854 GTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTAAACCTTATTGGCATGAAC 289795
Query 26161 AACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGA 26220
| |||||| || |||||||||| ||||| |||| | ||||| | ||||
Sbjct 289794 TGCGACCTCATGTCGCAGTACATTGAGTTCGTGGCGGACCGTTTGCTGGTGGAATTGGGC 289735
Query 26221 CTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280
| | | |||||| || ||||||||| |||| ||||| | || || ||||
Sbjct 289734 GTTGGAAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCCCTGGAC 289675
Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|| |||||||||||||| || |||| ||| ||||| || ||
Sbjct 289674 GGCAAGACCAACTTCTTCGAGAAGAAGGTGGGCGAGTACCA 289634
>seq8502
Length=4749
Score = 161 bits (178), Expect = 2e-34
Identities = 516/792 (65%), Gaps = 15/792 (2%)
Strand=Plus/Plus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||||||| ||||| || | ||| ||| || ||| | | ||| ||||| || | |
Sbjct 2077 GCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAG 2136
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||||||||||| ||||| || | || | || || || | ||| || ||||||
Sbjct 2137 TTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTG 2196
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|||||||| | || |||||| |||| ||| | | | | ||| ||| |
Sbjct 2197 AAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGA- 2255
Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952
||| || | ||||| | || | |||||| || | || || || ||| |
Sbjct 2256 CTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTTGCT---CGTATTTAGTGTACAGCTT 2312
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011
|| || | || || | | |||| |||||| || || || ||||| ||||||||
Sbjct 2313 CTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTGCGGG-CACATCAGCG 2371
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
||| | || ||| | | ||| | | ||||||||| || || ||||| || || | ||
Sbjct 2372 ACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAA 2431
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
| ||||| | || || | ||||||| ||| |||||||| | || |||| ||||||||
Sbjct 2432 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAA 2491
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
| | || | |||||| |||||||| || | ||| | || ||||| |||||| |||||
Sbjct 2492 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCAC 2551
Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|||||||||| | ||| | |||||||| | || | || || || || ||||
Sbjct 2552 CCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGG 2611
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311
| || || ||||| ||| | | || |||| | | | || || |
Sbjct 2612 AAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTC 2671
Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371
| || ||||| || ||||||||||||||||||| | | | | | ||||||||
Sbjct 2672 CAATGCCACCTGCCGATTTCGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCT 2731
Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT----GAGATTTGGTG 222427
| || ||||| || | | | ||| || ||||| || |||| || | ||||| |||
Sbjct 2732 CGATCGAGTCAGCCGTCATGGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTT-GTG 2790
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| | ||| ||| ||||| || ||||| || ||| | | | ||||| || | |
Sbjct 2791 GCA---GCGGCAAAAAGCGTTGGCGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTG 2847
Query 222488 TACGTCTCTACG 222499
|| || || |||
Sbjct 2848 TAGGTTTCCACG 2859
>seq1813
Length=4749
Score = 161 bits (178), Expect = 2e-34
Identities = 516/792 (65%), Gaps = 15/792 (2%)
Strand=Plus/Plus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||||||| ||||| || | ||| ||| || ||| | | ||| ||||| || | |
Sbjct 2076 GCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAG 2135
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||||||||||| ||||| || | || | || || || | ||| || ||||||
Sbjct 2136 TTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTG 2195
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|||||||| | || |||||| |||| ||| | | | | ||| ||| |
Sbjct 2196 AAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGA- 2254
Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952
||| || | ||||| | || | |||||| || | || || || ||| |
Sbjct 2255 CTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTTGCT---CGTATTTAGTGTACAGCTT 2311
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011
|| || | || || | | |||| |||||| || || || ||||| ||||||||
Sbjct 2312 CTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTGCGGG-CACATCAGCG 2370
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
||| | || ||| | | ||| | | ||||||||| || || ||||| || || | ||
Sbjct 2371 ACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAA 2430
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
| ||||| | || || | ||||||| ||| |||||||| | || |||| ||||||||
Sbjct 2431 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAA 2490
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
| | || | |||||| |||||||| || | ||| | || ||||| |||||| |||||
Sbjct 2491 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCAC 2550
Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|||||||||| | ||| | |||||||| | || | || || || || ||||
Sbjct 2551 CCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGG 2610
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311
| || || ||||| ||| | | || |||| | | | || || |
Sbjct 2611 AAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTC 2670
Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371
| || ||||| || ||||||||||||||||||| | | | | | ||||||||
Sbjct 2671 CAATGCCACCTGCCGATTTCGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCT 2730
Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT----GAGATTTGGTG 222427
| || ||||| || | | | ||| || ||||| || |||| || | ||||| |||
Sbjct 2731 CGATCGAGTCAGCCGTCATGGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTT-GTG 2789
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| | ||| ||| ||||| || ||||| || ||| | | | ||||| || | |
Sbjct 2790 GCA---GCGGCAAAAAGCGTTGGCGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTG 2846
Query 222488 TACGTCTCTACG 222499
|| || || |||
Sbjct 2847 TAGGTTTCCACG 2858
>seq8501
Length=20033
Score = 158 bits (174), Expect = 2e-33
Identities = 516/792 (65%), Gaps = 16/792 (2%)
Strand=Plus/Minus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||||||| ||||| || | ||| ||| || ||| | | ||| ||||| || | |
Sbjct 1877 GCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAG 1818
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||||||||||| ||||| || | || | || || || | ||| || ||||||
Sbjct 1817 TTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTG 1758
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|||||||| | || |||||| |||| ||| | | | | ||| ||| |
Sbjct 1757 AAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGA- 1699
Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952
||| || | ||||| | || | |||||| || | || || || ||| |
Sbjct 1698 CTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTTGCT---CGTATTTAGTGTACAGCTT 1642
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011
|| || | || || | | |||| |||||| || || || ||||| ||||||||
Sbjct 1641 CTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTGCGGG-CACATCAGCG 1583
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
||| | || ||| | | ||| | | ||||||||| || || ||||| || || | ||
Sbjct 1582 ACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAA 1523
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
| ||||| | || || | ||||||| ||| |||||||| | || |||| ||||||||
Sbjct 1522 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTTTC-TGAGTTCCAGAAACTCAA 1464
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
| | || | |||||| |||||||| || | ||| | || ||||| |||||| |||||
Sbjct 1463 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCAC 1404
Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|||||||||| | ||| | |||||||| | || | || || || || ||||
Sbjct 1403 CCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGG 1344
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311
| || || ||||| ||| | | || |||| | | | || || |
Sbjct 1343 AAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTC 1284
Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371
| || ||||| || ||||||||||||||||||| | | | | | ||||||||
Sbjct 1283 CAATGCCACCTGCCGATTTCGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCT 1224
Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT----GAGATTTGGTG 222427
| || ||||| || | | | ||| || ||||| || |||| || | ||||| |||
Sbjct 1223 CGATCGAGTCAGCCGTCATGGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTT-GTG 1165
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| | ||| ||| ||||| || ||||| || ||| | | | ||||| || | |
Sbjct 1164 GCA---GCGGCAAAAAGCGTTGGCGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTG 1108
Query 222488 TACGTCTCTACG 222499
|| || || |||
Sbjct 1107 TAGGTTTCCACG 1096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928579858631360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |