Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq22136 185 2e-41 seq8502 161 2e-34 seq1813 161 2e-34 seq8501 158 2e-33 >seq22136 Length=515022 Score = 185 bits (204), Expect = 2e-41 Identities = 537/821 (65%), Gaps = 25/821 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | || ||| |||| ||| |||||||| || || |||| | ||| ||| Sbjct 290440 CTGGACTGTGGAGGAGGTTGACCTGTCCAAGGACTTGACCGACTGGCATCGTCT---CAA 290384 Query 25572 AGACGAGCAGCATT--TTC-TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTAT 25628 ||||| ||| | ||| || | ||||| |||| ||||| || ||||| ||||| || Sbjct 290383 GGACGATGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCAT 290324 Query 25629 AGTGAACGAGAATCT-GTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGT 25687 || || ||||| || ||| ||| | |||| ||| |||||| | ||||||| | Sbjct 290323 TGTTAATGAGAACCTCGTG-GAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCCCGCT 290265 Query 25688 GTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTC 25747 | |||||||| |||||||| ||||| || || |||||||| ||| |||| || | | Sbjct 290264 GCTTCTACGGATTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGCGTGC 290208 Query 25748 TGATGACGTACA-TTACAGACGT----CGC-CGAGAGAGATCGGCTGTTTGGTGCCATCG 25801 |||| || ||| ||||| || ||| | || |||| ||||| ||||||| Sbjct 290207 TGAT--CG-ACACTTACATCCGGGATCCGCACCAGCGAGACTATCTGTTCAACGCCATCG 290151 Query 25802 AGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAG 25860 || || || ||| | ||| | |||||| |||||| || |||||| | | || Sbjct 290150 AGACGATGCC-AGCGGTGAAGCGCAAGGCGGACTGGGCCCTGTCCTGGATCTCCTCCAAG 290092 Query 25861 AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGC 25920 ||| | || || ||||| | | |||||||| || |||||||||||||| |||||| Sbjct 290091 TCCGCCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGC 290032 Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980 || || || |||| |||||||| ||| | || ||||| || ||| ||| Sbjct 290031 GGCAGTTTCGCCTCCATTTTCTGGCTAAAGAAACGCGGTTTGATGCCGGGCCTGACCTTC 289972 Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| || ||| | |||||||||| | ||| | || || ||| ||| | | | Sbjct 289971 TCCAACGAACTGATCTCCCGGGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTC 289912 Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100 | || || | || ||| | ||| | || | |||||| || || Sbjct 289911 CAG---CATCTGGTTCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGTGATGCG 289855 Query 26101 GTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAAC 26160 |||| || ||| ||||||| | | ||||||||| Sbjct 289854 GTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTAAACCTTATTGGCATGAAC 289795 Query 26161 AACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGA 26220 | |||||| || |||||||||| ||||| |||| | ||||| | |||| Sbjct 289794 TGCGACCTCATGTCGCAGTACATTGAGTTCGTGGCGGACCGTTTGCTGGTGGAATTGGGC 289735 Query 26221 CTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAA 26280 | | | |||||| || ||||||||| |||| ||||| | || || |||| Sbjct 289734 GTTGGAAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCCCTGGAC 289675 Query 26281 GGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || |||||||||||||| || |||| ||| ||||| || || Sbjct 289674 GGCAAGACCAACTTCTTCGAGAAGAAGGTGGGCGAGTACCA 289634 >seq8502 Length=4749 Score = 161 bits (178), Expect = 2e-34 Identities = 516/792 (65%), Gaps = 15/792 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| ||||| || | ||| ||| || ||| | | ||| ||||| || | | Sbjct 2077 GCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAG 2136 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||||||| ||||| || | || | || || || | ||| || |||||| Sbjct 2137 TTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTG 2196 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| | || |||||| |||| ||| | | | | ||| ||| | Sbjct 2197 AAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGA- 2255 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| || | ||||| | || | |||||| || | || || || ||| | Sbjct 2256 CTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTTGCT---CGTATTTAGTGTACAGCTT 2312 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011 || || | || || | | |||| |||||| || || || ||||| |||||||| Sbjct 2313 CTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTGCGGG-CACATCAGCG 2371 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||| | || ||| | | ||| | | ||||||||| || || ||||| || || | || Sbjct 2372 ACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAA 2431 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | || || | ||||||| ||| |||||||| | || |||| |||||||| Sbjct 2432 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAA 2491 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || | |||||| |||||||| || | ||| | || ||||| |||||| ||||| Sbjct 2492 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCAC 2551 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||||||||| | ||| | |||||||| | || | || || || || |||| Sbjct 2552 CCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGG 2611 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311 | || || ||||| ||| | | || |||| | | | || || | Sbjct 2612 AAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTC 2671 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | || ||||| || ||||||||||||||||||| | | | | | |||||||| Sbjct 2672 CAATGCCACCTGCCGATTTCGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCT 2731 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT----GAGATTTGGTG 222427 | || ||||| || | | | ||| || ||||| || |||| || | ||||| ||| Sbjct 2732 CGATCGAGTCAGCCGTCATGGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTT-GTG 2790 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | | ||| ||| ||||| || ||||| || ||| | | | ||||| || | | Sbjct 2791 GCA---GCGGCAAAAAGCGTTGGCGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTG 2847 Query 222488 TACGTCTCTACG 222499 || || || ||| Sbjct 2848 TAGGTTTCCACG 2859 >seq1813 Length=4749 Score = 161 bits (178), Expect = 2e-34 Identities = 516/792 (65%), Gaps = 15/792 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| ||||| || | ||| ||| || ||| | | ||| ||||| || | | Sbjct 2076 GCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAG 2135 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||||||| ||||| || | || | || || || | ||| || |||||| Sbjct 2136 TTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTG 2195 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| | || |||||| |||| ||| | | | | ||| ||| | Sbjct 2196 AAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGA- 2254 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| || | ||||| | || | |||||| || | || || || ||| | Sbjct 2255 CTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTTGCT---CGTATTTAGTGTACAGCTT 2311 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011 || || | || || | | |||| |||||| || || || ||||| |||||||| Sbjct 2312 CTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTGCGGG-CACATCAGCG 2370 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||| | || ||| | | ||| | | ||||||||| || || ||||| || || | || Sbjct 2371 ACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAA 2430 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | || || | ||||||| ||| |||||||| | || |||| |||||||| Sbjct 2431 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAA 2490 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || | |||||| |||||||| || | ||| | || ||||| |||||| ||||| Sbjct 2491 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCAC 2550 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||||||||| | ||| | |||||||| | || | || || || || |||| Sbjct 2551 CCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGG 2610 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311 | || || ||||| ||| | | || |||| | | | || || | Sbjct 2611 AAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTC 2670 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | || ||||| || ||||||||||||||||||| | | | | | |||||||| Sbjct 2671 CAATGCCACCTGCCGATTTCGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCT 2730 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT----GAGATTTGGTG 222427 | || ||||| || | | | ||| || ||||| || |||| || | ||||| ||| Sbjct 2731 CGATCGAGTCAGCCGTCATGGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTT-GTG 2789 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | | ||| ||| ||||| || ||||| || ||| | | | ||||| || | | Sbjct 2790 GCA---GCGGCAAAAAGCGTTGGCGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTG 2846 Query 222488 TACGTCTCTACG 222499 || || || ||| Sbjct 2847 TAGGTTTCCACG 2858 >seq8501 Length=20033 Score = 158 bits (174), Expect = 2e-33 Identities = 516/792 (65%), Gaps = 16/792 (2%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| ||||| || | ||| ||| || ||| | | ||| ||||| || | | Sbjct 1877 GCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAG 1818 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||||||| ||||| || | || | || || || | ||| || |||||| Sbjct 1817 TTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTG 1758 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| | || |||||| |||| ||| | | | | ||| ||| | Sbjct 1757 AAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGA- 1699 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| || | ||||| | || | |||||| || | || || || ||| | Sbjct 1698 CTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTTGCT---CGTATTTAGTGTACAGCTT 1642 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011 || || | || || | | |||| |||||| || || || ||||| |||||||| Sbjct 1641 CTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTGCGGG-CACATCAGCG 1583 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||| | || ||| | | ||| | | ||||||||| || || ||||| || || | || Sbjct 1582 ACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAA 1523 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | || || | ||||||| ||| |||||||| | || |||| |||||||| Sbjct 1522 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTTTC-TGAGTTCCAGAAACTCAA 1464 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || | |||||| |||||||| || | ||| | || ||||| |||||| ||||| Sbjct 1463 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCAC 1404 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||||||||| | ||| | |||||||| | || | || || || || |||| Sbjct 1403 CCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGG 1344 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311 | || || ||||| ||| | | || |||| | | | || || | Sbjct 1343 AAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTC 1284 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | || ||||| || ||||||||||||||||||| | | | | | |||||||| Sbjct 1283 CAATGCCACCTGCCGATTTCGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCT 1224 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT----GAGATTTGGTG 222427 | || ||||| || | | | ||| || ||||| || |||| || | ||||| ||| Sbjct 1223 CGATCGAGTCAGCCGTCATGGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTT-GTG 1165 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | | ||| ||| ||||| || ||||| || ||| | | | ||||| || | | Sbjct 1164 GCA---GCGGCAAAAAGCGTTGGCGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTG 1108 Query 222488 TACGTCTCTACG 222499 || || || ||| Sbjct 1107 TAGGTTTCCACG 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928579858631360