Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq22344 131 1e-24 seq20501 114 8e-20 seq5502 104 2e-16 seq21373 95.1 8e-14 >seq22344 Length=193125 Score = 131 bits (144), Expect = 1e-24 Identities = 363/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 189120 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 189061 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 189060 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 189001 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || || || || || | || | || || || | || | Sbjct 189000 CGGAGCGTCTGATCGGTGACGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 188941 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||||| || ||||| || || |||| || || || | Sbjct 188940 TCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGAAGACTCCGCTGTGCAGTCCGACA 188881 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | || || || || | || || | | | Sbjct 188880 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCTGACGGCAAGCCCAAGATCGAGGTGACCT 188821 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 188820 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 188763 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | || | |||| | |||| ||| ||||| || || | || || || || Sbjct 188762 GATGAAGGAGACTGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCTGTCATCACC 188705 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || ||||| || ||||| ||||| || || || || || || | || || Sbjct 188704 GTGCCGGCCTACTTTAACGACTCTCAGCGTCAGGCGACCAAGGACGCCGGCACCATCGCT 188645 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || | ||||| || || || || || || || || | || || ||||| Sbjct 188644 GGTCTGAACGTGCTGCGTATCATCAACGAGCCCACTGCCGCGGCTATCGCCTACGGTCTG 188585 Query 474869 GATAAGAA 474876 || ||||| Sbjct 188584 GACAAGAA 188577 >seq20501 Length=31302 Score = 114 bits (126), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 11165 TTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 11224 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| ||||| || Sbjct 11225 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCC 11284 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 11285 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 11340 >seq5502 Length=68615 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| || ||| || | || || || | || || Sbjct 6966 CGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 7025 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| | ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 7026 CGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCC 7085 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| || |||||||| || ||| |||||| || |||| || | | || ||| Sbjct 7086 TCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAA- 7144 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| | ||||| ||||| ||||| Sbjct 7145 GGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATTTG 7183 Score = 100 bits (110), Expect = 2e-15 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||||||||| ||||| ||||| || ||||| || |||||||| ||||| Sbjct 6575 ATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 6634 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 || |||||||| || ||| |||||| || |||| || | | ||| || || | Sbjct 6635 ATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCA-CTTCGAGAGTGA 6693 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| | ||||| ||||| ||||| Sbjct 6694 TGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTG 6727 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| || ||| || | || || || | || ||| Sbjct 6054 CGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTT 6113 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||||||| ||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 6114 CGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCC 6173 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || ||||| || ||| || || || || | || | | ||||| Sbjct 6174 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCA-CCTCAAG 6232 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| ||||| || || || ||||| ||||| ||||| Sbjct 6233 GGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTG 6271 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||||||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 6347 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTT 6406 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| |||||| || || | | | | || || ||||| Sbjct 6407 GTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAAT 6466 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 6467 GGTCTTGCCAGTCAGGGTCTTTACGAAGATCTG 6499 >seq21373 Length=211631 Score = 95.1 bits (104), Expect = 8e-14 Identities = 254/386 (66%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || || || || || || |||||||| | || ||||||||| | || ||| Sbjct 10467 AATCCGGACGAGGCGGTGGCCTACGGAGCTGCAATTCAGGCAGCTATTCTGTCGGGT--- 10523 Query 475853 TCAGACGAGA--AACTAAATAATAT---TG-TACTTGTTGACGTAACTCCACTTTCATTA 475906 ||||||| | | | || | | || | || || ||||| |||| ||||| | Sbjct 10524 ---GACGAGAGCAGCCAGATCAAAGACGTGCTGCTGGTGGACGTCGCTCCCCTTTCGCTC 10580 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 || | || || | ||| || | ||||| || || || || | || | | || || Sbjct 10581 GGAATCGAGACCGCTGGCGGAGTGATGACCAAGCTGATCGAGCGTAACAGCCGCATTCCG 10640 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 ||||| | || || ||| |||| || |||| || ||| | | |||||||||||| Sbjct 10641 TGCAAGCAGTCTAAGACATTCACCACGTACGCTGACAACCAACCGGCGGTAACCATCCAA 10700 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTT 476086 | ||||| || || | || || || || || ||| | || | || || || Sbjct 10701 GTGTTTGAGGGCGAGCGTGCTTTGACCAAGGACAACAACGTGTTGGGCAACTTCAACCTG 10760 Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 || ||||| || |||||||| ||||| || | || || || || || || |||| Sbjct 10761 ACGGGAATTCCACCCGCTCCCAGGGGAGTGCCGAAGATCGACGTCACCTTCGACCTTGAC 10820 Query 476147 GCAAATGGTATTCTTAATGTTACTGC 476172 || ||||||||||| ||||| || || Sbjct 10821 GCTAATGGTATTCTGAATGTGACCGC 10846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267200382372212