Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 132 1e-25
seq8501 122 3e-22
seq8502 120 9e-22
seq1813 120 9e-22
>seq22190
Length=927835
Score = 132 bits (146), Expect = 1e-25
Identities = 191/264 (72%), Gaps = 8/264 (3%)
Strand=Plus/Plus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| || | ||||||||| || ||||| ||| || ||| || ||||| |||
Sbjct 471012 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTCACAGCGGTA 471071
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693
||||| ||||| ||||||| |||||||| || || | | ||| || ||| || ||
Sbjct 471072 TCAATAAGACCTTCACGACCGCCCATAGCGTGAAAATAAAACTCGGAGGG-CGTCAGGCC 471130
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750
||| | | ||| |||| ||||| ||||| | |||||| || ||||||| ||| |
Sbjct 471131 GGCAAGATACGAGTTCTCCACGAAGCCACGGGACTCGGGACCGTAATCGTCT---TTGAT 471187
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
||||| || || || | || | | ||||| ||||| ||||| || || ||||||||
Sbjct 471188 GAAGTGGGGTAGAGTGCGCTTGCGAAATCCGTAAGGGATTCGCTTACCCTCTACGTTCTG 471247
Query 302811 CTGTCCCAGGCACGAAATCATCTG 302834
||| |||| || | ||| | |||
Sbjct 471248 CTGACCCACACAAGCAATAACCTG 471271
>seq8501
Length=20033
Score = 122 bits (134), Expect = 3e-22
Identities = 526/820 (64%), Gaps = 24/820 (3%)
Strand=Plus/Minus
Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464
||| || ||||||||||| || || || || || ||||| || ||||| | |||
Sbjct 2067 GTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG-GATTTCTTTG 2009
Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520
| ||| | ||| ||||| || | |||||| || || || | |||| ||||||
Sbjct 2008 CCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTGGTAACC---G 1952
Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580
|||||| || || | |||| | |||||| |||| || | ||||||||
Sbjct 1951 TCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTCTCGGGTGTGACAAACATGT 1892
Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638
|||| | || || ||||| || || || ||| |||| | || || | ||||| ||
Sbjct 1891 TAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCAT--CCGGCGAGGAATATTCAAC 1834
Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698
|| || ||||| ||| | ||| |||||||| | |||| |||||| ||| ||
Sbjct 1833 GATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCT 1774
Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758
||| || ||||||||| | || || || ||| | || || |||| ||| | || | |||
Sbjct 1773 GTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAAT 1714
Query 155759 CTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815
| ||| | | | || || | || | ||| | || || ||| ||
Sbjct 1713 GGCAAACCACAAGGACTGAGCCTTGACCGTTCG---GTTCGCACGACCCTCTTGCTCGTA 1657
Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875
||| | |||||| | | | || || || | ||| ||| || ||||| || |
Sbjct 1656 TTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTG 1597
Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935
||||| | |||||||||| | | ||| | || || | ||| || | |||
Sbjct 1596 CGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTAT 1537
Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994
||||| || || || || || | || |||||| | ||| ||| || ||| | |
Sbjct 1536 CCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTG-TTTTTCTG-A 1479
Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054
| || | || || | ||| | || |||||||| || || ||||| |||
Sbjct 1478 GTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGG 1419
Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111
| ||| |||||||||||| ||||| || || || |||||||| | ||||| |
Sbjct 1418 GACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGG 1359
Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171
||| | ||||||||||||||||| || |||| |||| | || || || |
Sbjct 1358 GAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGC 1299
Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211
||||| || |||||||| ||||||| | |||| || ||
Sbjct 1298 AATGAACATTCAGTCCAATGCCACCTGCCGATTTCGAGAT 1259
>seq8502
Length=4749
Score = 120 bits (132), Expect = 9e-22
Identities = 525/820 (64%), Gaps = 23/820 (3%)
Strand=Plus/Plus
Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464
||| || ||||||||||| || || || || || ||||| || ||||| | |||
Sbjct 1887 GTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG-GATTTCTTTG 1945
Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520
| ||| | ||| ||||| || | |||||| || || || | |||| ||||||
Sbjct 1946 CCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTGGTAACC---G 2002
Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580
|||||| || || | |||| | |||||| |||| || | ||||||||
Sbjct 2003 TCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTCTCGGGTGTGACAAACATGT 2062
Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638
|||| | || || ||||| || || || ||| |||| | || || | ||||| ||
Sbjct 2063 TAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCAT--CCGGCGAGGAATATTCAAC 2120
Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698
|| || ||||| ||| | ||| |||||||| | |||| |||||| ||| ||
Sbjct 2121 GATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCT 2180
Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758
||| || ||||||||| | || || || ||| | || || |||| ||| | || | |||
Sbjct 2181 GTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAAT 2240
Query 155759 CTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815
| ||| | | | || || | || | ||| | || || ||| ||
Sbjct 2241 GGCAAACCACAAGGACTGAGCCTTGACCGTTCG---GTTCGCACGACCCTCTTGCTCGTA 2297
Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875
||| | |||||| | | | || || || | ||| ||| || ||||| || |
Sbjct 2298 TTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTG 2357
Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935
||||| | |||||||||| | | ||| | || || | ||| || | |||
Sbjct 2358 CGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTAT 2417
Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994
||||| || || || || || | || |||||| | ||| ||| || ||| |
Sbjct 2418 CCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTG-TTTTTCTTGA 2476
Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054
| || | || || | ||| | || |||||||| || || ||||| |||
Sbjct 2477 GTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGG 2536
Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111
| ||| |||||||||||| ||||| || || || |||||||| | ||||| |
Sbjct 2537 GACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGG 2596
Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171
||| | ||||||||||||||||| || |||| |||| | || || || |
Sbjct 2597 GAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGC 2656
Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211
||||| || |||||||| ||||||| | |||| || ||
Sbjct 2657 AATGAACATTCAGTCCAATGCCACCTGCCGATTTCGAGAT 2696
>seq1813
Length=4749
Score = 120 bits (132), Expect = 9e-22
Identities = 525/820 (64%), Gaps = 23/820 (3%)
Strand=Plus/Plus
Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464
||| || ||||||||||| || || || || || ||||| || ||||| | |||
Sbjct 1886 GTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG-GATTTCTTTG 1944
Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520
| ||| | ||| ||||| || | |||||| || || || | |||| ||||||
Sbjct 1945 CCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTGGTAACC---G 2001
Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580
|||||| || || | |||| | |||||| |||| || | ||||||||
Sbjct 2002 TCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTCTCGGGTGTGACAAACATGT 2061
Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638
|||| | || || ||||| || || || ||| |||| | || || | ||||| ||
Sbjct 2062 TAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCAT--CCGGCGAGGAATATTCAAC 2119
Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698
|| || ||||| ||| | ||| |||||||| | |||| |||||| ||| ||
Sbjct 2120 GATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCT 2179
Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758
||| || ||||||||| | || || || ||| | || || |||| ||| | || | |||
Sbjct 2180 GTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAAT 2239
Query 155759 CTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815
| ||| | | | || || | || | ||| | || || ||| ||
Sbjct 2240 GGCAAACCACAAGGACTGAGCCTTGACCGTTCG---GTTCGCACGACCCTCTTGCTCGTA 2296
Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875
||| | |||||| | | | || || || | ||| ||| || ||||| || |
Sbjct 2297 TTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTG 2356
Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935
||||| | |||||||||| | | ||| | || || | ||| || | |||
Sbjct 2357 CGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTAT 2416
Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994
||||| || || || || || | || |||||| | ||| ||| || ||| |
Sbjct 2417 CCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTG-TTTTTCTTGA 2475
Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054
| || | || || | ||| | || |||||||| || || ||||| |||
Sbjct 2476 GTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGG 2535
Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111
| ||| |||||||||||| ||||| || || || |||||||| | ||||| |
Sbjct 2536 GACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGG 2595
Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171
||| | ||||||||||||||||| || |||| |||| | || || || |
Sbjct 2596 GAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGC 2655
Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211
||||| || |||||||| ||||||| | |||| || ||
Sbjct 2656 AATGAACATTCAGTCCAATGCCACCTGCCGATTTCGAGAT 2695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471387286988003
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