Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22190 132 1e-25 seq8501 122 3e-22 seq8502 120 9e-22 seq1813 120 9e-22 >seq22190 Length=927835 Score = 132 bits (146), Expect = 1e-25 Identities = 191/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| || ||||| ||| Sbjct 471012 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTCACAGCGGTA 471071 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| ||||||| |||||||| || || | | ||| || ||| || || Sbjct 471072 TCAATAAGACCTTCACGACCGCCCATAGCGTGAAAATAAAACTCGGAGGG-CGTCAGGCC 471130 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 ||| | | ||| |||| ||||| ||||| | |||||| || ||||||| ||| | Sbjct 471131 GGCAAGATACGAGTTCTCCACGAAGCCACGGGACTCGGGACCGTAATCGTCT---TTGAT 471187 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || || || | || | | ||||| ||||| ||||| || || |||||||| Sbjct 471188 GAAGTGGGGTAGAGTGCGCTTGCGAAATCCGTAAGGGATTCGCTTACCCTCTACGTTCTG 471247 Query 302811 CTGTCCCAGGCACGAAATCATCTG 302834 ||| |||| || | ||| | ||| Sbjct 471248 CTGACCCACACAAGCAATAACCTG 471271 >seq8501 Length=20033 Score = 122 bits (134), Expect = 3e-22 Identities = 526/820 (64%), Gaps = 24/820 (3%) Strand=Plus/Minus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || ||||||||||| || || || || || ||||| || ||||| | ||| Sbjct 2067 GTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG-GATTTCTTTG 2009 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520 | ||| | ||| ||||| || | |||||| || || || | |||| |||||| Sbjct 2008 CCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTGGTAACC---G 1952 Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580 |||||| || || | |||| | |||||| |||| || | |||||||| Sbjct 1951 TCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTCTCGGGTGTGACAAACATGT 1892 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638 |||| | || || ||||| || || || ||| |||| | || || | ||||| || Sbjct 1891 TAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCAT--CCGGCGAGGAATATTCAAC 1834 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 || || ||||| ||| | ||| |||||||| | |||| |||||| ||| || Sbjct 1833 GATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCT 1774 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||| || ||||||||| | || || || ||| | || || |||| ||| | || | ||| Sbjct 1773 GTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAAT 1714 Query 155759 CTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815 | ||| | | | || || | || | ||| | || || ||| || Sbjct 1713 GGCAAACCACAAGGACTGAGCCTTGACCGTTCG---GTTCGCACGACCCTCTTGCTCGTA 1657 Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875 ||| | |||||| | | | || || || | ||| ||| || ||||| || | Sbjct 1656 TTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTG 1597 Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935 ||||| | |||||||||| | | ||| | || || | ||| || | ||| Sbjct 1596 CGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTAT 1537 Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994 ||||| || || || || || | || |||||| | ||| ||| || ||| | | Sbjct 1536 CCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTG-TTTTTCTG-A 1479 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | || || | ||| | || |||||||| || || ||||| ||| Sbjct 1478 GTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGG 1419 Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | ||| |||||||||||| ||||| || || || |||||||| | ||||| | Sbjct 1418 GACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGG 1359 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 ||| | ||||||||||||||||| || |||| |||| | || || || | Sbjct 1358 GAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGC 1299 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211 ||||| || |||||||| ||||||| | |||| || || Sbjct 1298 AATGAACATTCAGTCCAATGCCACCTGCCGATTTCGAGAT 1259 >seq8502 Length=4749 Score = 120 bits (132), Expect = 9e-22 Identities = 525/820 (64%), Gaps = 23/820 (3%) Strand=Plus/Plus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || ||||||||||| || || || || || ||||| || ||||| | ||| Sbjct 1887 GTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG-GATTTCTTTG 1945 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520 | ||| | ||| ||||| || | |||||| || || || | |||| |||||| Sbjct 1946 CCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTGGTAACC---G 2002 Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580 |||||| || || | |||| | |||||| |||| || | |||||||| Sbjct 2003 TCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTCTCGGGTGTGACAAACATGT 2062 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638 |||| | || || ||||| || || || ||| |||| | || || | ||||| || Sbjct 2063 TAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCAT--CCGGCGAGGAATATTCAAC 2120 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 || || ||||| ||| | ||| |||||||| | |||| |||||| ||| || Sbjct 2121 GATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCT 2180 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||| || ||||||||| | || || || ||| | || || |||| ||| | || | ||| Sbjct 2181 GTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAAT 2240 Query 155759 CTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815 | ||| | | | || || | || | ||| | || || ||| || Sbjct 2241 GGCAAACCACAAGGACTGAGCCTTGACCGTTCG---GTTCGCACGACCCTCTTGCTCGTA 2297 Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875 ||| | |||||| | | | || || || | ||| ||| || ||||| || | Sbjct 2298 TTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTG 2357 Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935 ||||| | |||||||||| | | ||| | || || | ||| || | ||| Sbjct 2358 CGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTAT 2417 Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994 ||||| || || || || || | || |||||| | ||| ||| || ||| | Sbjct 2418 CCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTG-TTTTTCTTGA 2476 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | || || | ||| | || |||||||| || || ||||| ||| Sbjct 2477 GTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGG 2536 Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | ||| |||||||||||| ||||| || || || |||||||| | ||||| | Sbjct 2537 GACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGG 2596 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 ||| | ||||||||||||||||| || |||| |||| | || || || | Sbjct 2597 GAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGC 2656 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211 ||||| || |||||||| ||||||| | |||| || || Sbjct 2657 AATGAACATTCAGTCCAATGCCACCTGCCGATTTCGAGAT 2696 >seq1813 Length=4749 Score = 120 bits (132), Expect = 9e-22 Identities = 525/820 (64%), Gaps = 23/820 (3%) Strand=Plus/Plus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || ||||||||||| || || || || || ||||| || ||||| | ||| Sbjct 1886 GTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG-GATTTCTTTG 1944 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520 | ||| | ||| ||||| || | |||||| || || || | |||| |||||| Sbjct 1945 CCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTGGTAACC---G 2001 Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580 |||||| || || | |||| | |||||| |||| || | |||||||| Sbjct 2002 TCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTCTCGGGTGTGACAAACATGT 2061 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTAC 155638 |||| | || || ||||| || || || ||| |||| | || || | ||||| || Sbjct 2062 TAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCAT--CCGGCGAGGAATATTCAAC 2119 Query 155639 AATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACT 155698 || || ||||| ||| | ||| |||||||| | |||| |||||| ||| || Sbjct 2120 GATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTGCTTTTCCT 2179 Query 155699 GTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 ||| || ||||||||| | || || || ||| | || || |||| ||| | || | ||| Sbjct 2180 GTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGACTCAATAAT 2239 Query 155759 CTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815 | ||| | | | || || | || | ||| | || || ||| || Sbjct 2240 GGCAAACCACAAGGACTGAGCCTTGACCGTTCG---GTTCGCACGACCCTCTTGCTCGTA 2296 Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875 ||| | |||||| | | | || || || | ||| ||| || ||||| || | Sbjct 2297 TTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGCATTTGTG 2356 Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935 ||||| | |||||||||| | | ||| | || || | ||| || | ||| Sbjct 2357 CGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGATCGGGTAT 2416 Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994 ||||| || || || || || | || |||||| | ||| ||| || ||| | Sbjct 2417 CCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTG-TTTTTCTTGA 2475 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | || || | ||| | || |||||||| || || ||||| ||| Sbjct 2476 GTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGG 2535 Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | ||| |||||||||||| ||||| || || || |||||||| | ||||| | Sbjct 2536 GACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCAGCATGG 2595 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 ||| | ||||||||||||||||| || |||| |||| | || || || | Sbjct 2596 GAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAATAGAGGTGCCTTTTGCCCGGATGC 2655 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAAT 156211 ||||| || |||||||| ||||||| | |||| || || Sbjct 2656 AATGAACATTCAGTCCAATGCCACCTGCCGATTTCGAGAT 2695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471387286988003