Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq22136 127 2e-23 seq4984 127 2e-23 seq21710 123 3e-22 seq8502 96.9 4e-14 seq1813 96.9 4e-14 seq8501 93.3 5e-13 seq12120 91.5 2e-12 >seq22136 Length=515022 Score = 127 bits (140), Expect = 2e-23 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || || ||||| |||||||| || || | | || || ||| || Sbjct 465357 AGAAGCGCACGGATGATATCTCTTCGTGGGACGCCGATTTCCTCAAAGTGGACCAGGGCA 465298 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| ||||||| ||||||||||||||| | ||| || || || || | Sbjct 465297 CCCTGTTCGAGCTGATCCTGGCCGCCAACTACCTCAATATCCAGGGCCTCCTGGACGTCA 465238 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | ||||||||||||||||||||||||| ||| |||| |||||| | || | Sbjct 465237 CCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGTTGCCGCAGGAAATCCGCGACACGT 465178 Query 1592286 TTAACATCAA 1592295 | |||||| Sbjct 465177 TCGCCATCAA 465168 Score = 125 bits (138), Expect = 9e-23 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| || ||||| ||||||| |||| ||||| ||||| | ||| Sbjct 289937 TGCAATCCCTCGTCCCGGGAGATCAGTTCGTTGGAGAAGGTCAGGCCCGGCATCAAACCG 289996 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 || ||||| ||||| || |||| | ||||||||| ||| ||||||||||| |||||| Sbjct 289997 CGTTTCTTTAGCCAGAAAATGGAGGCGAAACTGCCGCTGAAGAAGATGCCCTCCACGGCG 290056 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 |||||| |||||| ||||| | || || | | || | |||||| || Sbjct 290057 GCAAAGGCGATGATGCGCTCCCCGAAATTGGC---GGACTTGGAGGAGATCCAGGACAGG 290113 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 |||||||| ||||| | |||||| |||| ||| ||||||||| || || | ||| Sbjct 290114 GCCCAGTCCGCCTTGCGCTTCACCGCTGGCATCGTCTCGATGGCGTTGAACAGATAGTCT 290173 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | | ||| ||| || || ||||||||||| Sbjct 290174 CGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAG 290208 Score = 116 bits (128), Expect = 5e-20 Identities = 171/238 (72%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||||||||| ||||| ||| | |||| | | | Sbjct 290223 CCGAGTGCACGTTCTCCATGGCGATCTGGAATCCGTAGAAGCAGCGGGCCTCCGTGATCT 290282 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || | | |||||||| || ||||| ||| |||||||| Sbjct 290283 GCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTAACAATGCCATCGGAGGCGGCGA 290342 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGACACCCAGTGG 869809 | || ||||| |||||| ||| ||||| ||||| ||||| |||| ||| ||||| Sbjct 290343 AGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCATCGTCCTTGAGACGA-TGCCAGT-- 290399 Query 869810 ACGGT---GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| ||| | ||||| |||||||| | ||||||| |||||||| |||| Sbjct 290400 -CGGTCAAGTCCTTGGACAGGTCAACCTCCTCCACAGTCCAGAAAGAGGCCTCAGCCT 290456 Score = 111 bits (122), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| | |||||| |||||||||||||| || || ||||||| |||||| Sbjct 289636 GTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCCAT 289695 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||||||||| || |||||| |||| | || | | | |||| || Sbjct 289696 GAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCAAACG 289755 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||| || || ||||| |||||||| |||||||| || ||||||||| || || || Sbjct 289756 GTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGTTTAC 289815 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | ||| | | ||||| | ||| || | || || || |||||||| Sbjct 289816 GGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCACGGATGATCT 289871 >seq4984 Length=20718 Score = 127 bits (140), Expect = 2e-23 Identities = 335/502 (67%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| || || ||||||||||| || || ||||||||||| || | |||| || | Sbjct 2528 AAGGTGAAGATTTTGCGCTGGTCTACGCCACCGAACTGGGCGTCCACCTTAAGGTACTCC 2587 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATC 1852282 ||||| |||||||||| || || |||| | ||||| |||| |||| | Sbjct 2588 TCGTCCAGGGCCTGCAGTCCAGGATAAAGCAAGCCAGAGAGGAGTGGGTAC---TCCACC 2644 Query 1852283 T---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCG 1852336 | ||||||||| || | ||||| | ||| | ||| | ||| ||| | || Sbjct 2645 TGTTTGACCACCTCGGCTCCTGCCTTCTTCGCGTCATGCTGCGTGACAACG-GAGCTT-- 2701 Query 1852337 AGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CACTGG-TACTCGGTGCCGCGCACAA 1852394 ||| ||||| || || | ||| | || | || | | || ||| |||| ||||| Sbjct 2702 AGTTTGTAGACATCCAGGGTGTA--CTCCTTGGACAGTTGATAGTCGCTGCCCTTCACAA 2759 Query 1852395 ACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 1852454 ||| || ||||||| ||||||||| |||||| || |||||| | |||| Sbjct 2760 ACTTTAGCTTCTCCAGCGGAACGCCGATGGAACTGAGCATTGCTTTGATGACCTGTTCGT 2819 Query 1852455 ACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGT 1852514 | | || || | || | ||| |||||| | ||| |||||| || | ||| | Sbjct 2820 AGTATTGGGTACGCAGCTCTAGCAGAGACCACGGTGCCTTCATGTTGTCCAGATAGGCAT 2879 Query 1852515 GCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGA 1852574 ||| ||||| || |||||| | ||| || || |||| |||||||| || | || Sbjct 2880 GCAGATCGGCGAACAGGATCGTCACCTCGCATCCCGCCTTCAGAAAGTCCGCAATCTTTG 2939 Query 1852575 AGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGA 1852634 | ||||||||||| ||| | | || || |||||||||| ||||| ||||| ||||| Sbjct 2940 ACATGGGCACAAAATAGGCGACATGTGGCTTGCCCGTCGTTGCCGTTCCCCAGTATATCT 2999 Query 1852635 TCAGGGGGCGCTCGGCCATGAT 1852656 |||| ||||| |||| ||| Sbjct 3000 TCAGATCCCGCTCCGCCAGGAT 3021 >seq21710 Length=1531227 Score = 123 bits (136), Expect = 3e-22 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || ||||| ||||||| || || | ||||| ||| || Sbjct 788399 AGAAGCGCACGGATGACATTATCTCGTGGGATGCCGACTTCCTGAAAGTCGACCAGGGCA 788340 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| | || || || ||||| || || ||||||||| || || || || Sbjct 788339 CTCTGTTCGAGCTCATACTGGCTGCCAATTATCTGGACATCAAGGGCCTACTGGAGCTCA 788280 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| ||||||||||||||| | || ||||||||||||||||||| Sbjct 788279 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGACTCCGGAGGAGATCCGCAAGACCT 788220 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 788219 TCAACATCAAG 788209 >seq8502 Length=4749 Score = 96.9 bits (106), Expect = 4e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 ||||||||||| || | | ||| || | |||||||| | || || | | || Sbjct 2335 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2394 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| ||||| || |||| || |||||||| || ||||| || || |||||| Sbjct 2395 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2454 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 |||||||| ||| || ||||| || || | || | | || | |||||| |||||| Sbjct 2455 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2514 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| ||||||||| || ||||||||||| || Sbjct 2515 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2552 >seq1813 Length=4749 Score = 96.9 bits (106), Expect = 4e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 ||||||||||| || | | ||| || | |||||||| | || || | | || Sbjct 2334 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2393 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| ||||| || |||| || |||||||| || ||||| || || |||||| Sbjct 2394 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2453 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 |||||||| ||| || ||||| || || | || | | || | |||||| |||||| Sbjct 2454 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2513 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| ||||||||| || ||||||||||| || Sbjct 2514 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2551 >seq8501 Length=20033 Score = 93.3 bits (102), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 ||||||||||| || | | ||| || | |||||||| | || || | | || Sbjct 1619 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 1560 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| ||||| || |||| || |||||||| || ||||| || || |||||| Sbjct 1559 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 1500 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 |||||||| ||| ||| |||| || || | || | | || | |||||| |||||| Sbjct 1499 TCCTTGCCAGTGTT-TTTCTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 1441 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| ||||||||| || ||||||||||| || Sbjct 1440 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 1403 >seq12120 Length=24505 Score = 91.5 bits (100), Expect = 2e-12 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 1592156 GAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATC--AAGCCTC 1592213 || ||| ||| ||||| ||| | ||||| || ||||||||| | |||||| ||| || Sbjct 16903 GATCAGGGCACTCTCTTCGAGCTCATCCTGGCGGCCAACTACTTGGACATCCGAAG--TC 16960 Query 1592214 TGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGA 1592273 | || || | |||| | | |||||||||||||||||||| | || | ||||||| Sbjct 16961 TACTGAATGCCGCCTGCATGACGGTGGCCAACATGATCAAGGGTCACACGGCAGAGGAGA 17020 Query 1592274 TCCGCAAGACCTTTAACATCA 1592294 | ||||||||||| |||||| Sbjct 17021 TTCGCAAGACCTTCCACATCA 17041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105266565998623