Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq22136 127 2e-23
seq4984 127 2e-23
seq21710 123 3e-22
seq8502 96.9 4e-14
seq1813 96.9 4e-14
seq8501 93.3 5e-13
seq12120 91.5 2e-12
>seq22136
Length=515022
Score = 127 bits (140), Expect = 2e-23
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||||||||| || || ||||| |||||||| || || | | || || ||| ||
Sbjct 465357 AGAAGCGCACGGATGATATCTCTTCGTGGGACGCCGATTTCCTCAAAGTGGACCAGGGCA 465298
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
|||| || ||| ||||||| ||||||||||||||| | ||| || || || || |
Sbjct 465297 CCCTGTTCGAGCTGATCCTGGCCGCCAACTACCTCAATATCCAGGGCCTCCTGGACGTCA 465238
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | ||||||||||||||||||||||||| ||| |||| |||||| | || |
Sbjct 465237 CCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGTTGCCGCAGGAAATCCGCGACACGT 465178
Query 1592286 TTAACATCAA 1592295
| ||||||
Sbjct 465177 TCGCCATCAA 465168
Score = 125 bits (138), Expect = 9e-23
Identities = 193/275 (70%), Gaps = 3/275 (1%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | || ||||| || ||||| ||||||| |||| ||||| ||||| | |||
Sbjct 289937 TGCAATCCCTCGTCCCGGGAGATCAGTTCGTTGGAGAAGGTCAGGCCCGGCATCAAACCG 289996
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293
|| ||||| ||||| || |||| | ||||||||| ||| ||||||||||| ||||||
Sbjct 289997 CGTTTCTTTAGCCAGAAAATGGAGGCGAAACTGCCGCTGAAGAAGATGCCCTCCACGGCG 290056
Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353
|||||| |||||| ||||| | || || | | || | |||||| ||
Sbjct 290057 GCAAAGGCGATGATGCGCTCCCCGAAATTGGC---GGACTTGGAGGAGATCCAGGACAGG 290113
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413
|||||||| ||||| | |||||| |||| ||| ||||||||| || || | |||
Sbjct 290114 GCCCAGTCCGCCTTGCGCTTCACCGCTGGCATCGTCTCGATGGCGTTGAACAGATAGTCT 290173
Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448
| | ||| ||| || || |||||||||||
Sbjct 290174 CGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAG 290208
Score = 116 bits (128), Expect = 5e-20
Identities = 171/238 (72%), Gaps = 8/238 (3%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||| | |||||| |||||||||||||| ||||| ||| | |||| | | |
Sbjct 290223 CCGAGTGCACGTTCTCCATGGCGATCTGGAATCCGTAGAAGCAGCGGGCCTCCGTGATCT 290282
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| ||||||| |||| || | | |||||||| || ||||| ||| ||||||||
Sbjct 290283 GCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTAACAATGCCATCGGAGGCGGCGA 290342
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGACACCCAGTGG 869809
| || ||||| |||||| ||| ||||| ||||| ||||| |||| ||| |||||
Sbjct 290343 AGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCATCGTCCTTGAGACGA-TGCCAGT-- 290399
Query 869810 ACGGT---GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
|||| ||| | ||||| |||||||| | ||||||| |||||||| ||||
Sbjct 290400 -CGGTCAAGTCCTTGGACAGGTCAACCTCCTCCACAGTCCAGAAAGAGGCCTCAGCCT 290456
Score = 111 bits (122), Expect = 2e-18
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
|||||||||||| | |||||| |||||||||||||| || || ||||||| ||||||
Sbjct 289636 GTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCCAT 289695
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
| ||||||||| || |||||| |||| | || | | | |||| ||
Sbjct 289696 GAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCAAACG 289755
Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878
||| || || ||||| |||||||| |||||||| || ||||||||| || || ||
Sbjct 289756 GTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGTTTAC 289815
Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934
||||| | ||| | | ||||| | ||| || | || || || ||||||||
Sbjct 289816 GGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCACGGATGATCT 289871
>seq4984
Length=20718
Score = 127 bits (140), Expect = 2e-23
Identities = 335/502 (67%), Gaps = 16/502 (3%)
Strand=Plus/Plus
Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222
|||| || || ||||||||||| || || ||||||||||| || | |||| || |
Sbjct 2528 AAGGTGAAGATTTTGCGCTGGTCTACGCCACCGAACTGGGCGTCCACCTTAAGGTACTCC 2587
Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATC 1852282
||||| |||||||||| || || |||| | ||||| |||| |||| |
Sbjct 2588 TCGTCCAGGGCCTGCAGTCCAGGATAAAGCAAGCCAGAGAGGAGTGGGTAC---TCCACC 2644
Query 1852283 T---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCG 1852336
| ||||||||| || | ||||| | ||| | ||| | ||| ||| | ||
Sbjct 2645 TGTTTGACCACCTCGGCTCCTGCCTTCTTCGCGTCATGCTGCGTGACAACG-GAGCTT-- 2701
Query 1852337 AGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CACTGG-TACTCGGTGCCGCGCACAA 1852394
||| ||||| || || | ||| | || | || | | || ||| |||| |||||
Sbjct 2702 AGTTTGTAGACATCCAGGGTGTA--CTCCTTGGACAGTTGATAGTCGCTGCCCTTCACAA 2759
Query 1852395 ACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 1852454
||| || ||||||| ||||||||| |||||| || |||||| | ||||
Sbjct 2760 ACTTTAGCTTCTCCAGCGGAACGCCGATGGAACTGAGCATTGCTTTGATGACCTGTTCGT 2819
Query 1852455 ACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGT 1852514
| | || || | || | ||| |||||| | ||| |||||| || | ||| |
Sbjct 2820 AGTATTGGGTACGCAGCTCTAGCAGAGACCACGGTGCCTTCATGTTGTCCAGATAGGCAT 2879
Query 1852515 GCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGA 1852574
||| ||||| || |||||| | ||| || || |||| |||||||| || | ||
Sbjct 2880 GCAGATCGGCGAACAGGATCGTCACCTCGCATCCCGCCTTCAGAAAGTCCGCAATCTTTG 2939
Query 1852575 AGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGA 1852634
| ||||||||||| ||| | | || || |||||||||| ||||| ||||| |||||
Sbjct 2940 ACATGGGCACAAAATAGGCGACATGTGGCTTGCCCGTCGTTGCCGTTCCCCAGTATATCT 2999
Query 1852635 TCAGGGGGCGCTCGGCCATGAT 1852656
|||| ||||| |||| |||
Sbjct 3000 TCAGATCCCGCTCCGCCAGGAT 3021
>seq21710
Length=1531227
Score = 123 bits (136), Expect = 3e-22
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||||||||| || ||||| ||||||| || || | ||||| ||| ||
Sbjct 788399 AGAAGCGCACGGATGACATTATCTCGTGGGATGCCGACTTCCTGAAAGTCGACCAGGGCA 788340
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| || || ||| | || || || ||||| || || ||||||||| || || || ||
Sbjct 788339 CTCTGTTCGAGCTCATACTGGCTGCCAATTATCTGGACATCAAGGGCCTACTGGAGCTCA 788280
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | |||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 788279 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGACTCCGGAGGAGATCCGCAAGACCT 788220
Query 1592286 TTAACATCAAG 1592296
| |||||||||
Sbjct 788219 TCAACATCAAG 788209
>seq8502
Length=4749
Score = 96.9 bits (106), Expect = 4e-14
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442
||||||||||| || | | ||| || | |||||||| | || || | | ||
Sbjct 2335 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2394
Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502
|| ||| ||||| || |||| || |||||||| || ||||| || || ||||||
Sbjct 2395 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2454
Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562
|||||||| ||| || ||||| || || | || | | || | |||||| ||||||
Sbjct 2455 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2514
Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
||||| ||||||||| || ||||||||||| ||
Sbjct 2515 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2552
>seq1813
Length=4749
Score = 96.9 bits (106), Expect = 4e-14
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442
||||||||||| || | | ||| || | |||||||| | || || | | ||
Sbjct 2334 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2393
Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502
|| ||| ||||| || |||| || |||||||| || ||||| || || ||||||
Sbjct 2394 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2453
Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562
|||||||| ||| || ||||| || || | || | | || | |||||| ||||||
Sbjct 2454 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2513
Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
||||| ||||||||| || ||||||||||| ||
Sbjct 2514 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2551
>seq8501
Length=20033
Score = 93.3 bits (102), Expect = 5e-13
Identities = 152/218 (70%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442
||||||||||| || | | ||| || | |||||||| | || || | | ||
Sbjct 1619 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 1560
Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502
|| ||| ||||| || |||| || |||||||| || ||||| || || ||||||
Sbjct 1559 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 1500
Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562
|||||||| ||| ||| |||| || || | || | | || | |||||| ||||||
Sbjct 1499 TCCTTGCCAGTGTT-TTTCTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 1441
Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
||||| ||||||||| || ||||||||||| ||
Sbjct 1440 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 1403
>seq12120
Length=24505
Score = 91.5 bits (100), Expect = 2e-12
Identities = 106/141 (75%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 1592156 GAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATC--AAGCCTC 1592213
|| ||| ||| ||||| ||| | ||||| || ||||||||| | |||||| ||| ||
Sbjct 16903 GATCAGGGCACTCTCTTCGAGCTCATCCTGGCGGCCAACTACTTGGACATCCGAAG--TC 16960
Query 1592214 TGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGA 1592273
| || || | |||| | | |||||||||||||||||||| | || | |||||||
Sbjct 16961 TACTGAATGCCGCCTGCATGACGGTGGCCAACATGATCAAGGGTCACACGGCAGAGGAGA 17020
Query 1592274 TCCGCAAGACCTTTAACATCA 1592294
| ||||||||||| ||||||
Sbjct 17021 TTCGCAAGACCTTCCACATCA 17041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105266565998623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |