Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19246 138 9e-28 seq22228 89.7 4e-13 >seq19246 Length=256796 Score = 138 bits (152), Expect = 9e-28 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 || || ||||||||||| || || || || || ||||| || | ||||| ||||| | Sbjct 132416 GTCTGGGCGCCCAGCTCACATCCAAAATATTTAGTCGGATAGGTAGCCGGTCGTCCTATG 132357 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||| || | ||| | |||||| || | ||| |||||||||||||| ||||||||||| Sbjct 132356 GCCCGAGCCACTTCAGCCATGTTCACAAGGACGGTCTTGATGCCGTTTCCCTTTCCTTCT 132297 Query 34567 ACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGT 34624 ||||| || ||||| || ||||| || ||||| || || ||||| |||| |||||| Sbjct 132296 ACCTTTGCCTGCAGA--CGTGGCATCTTATAGCGATAAAAGATGTCCGTCACACTGCGGT 132239 Query 34625 TAACGTTCACAGTCCCCAT 34643 ||||||| || || |||| Sbjct 132238 TAACGTTTACGGTGGCCAT 132220 >seq22228 Length=358660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || |||||||| |||||||||||||| || || |||| || ||||||||| | ||| || Sbjct 288014 GGTCTGCACGGATTCCACGTGCACGAGTTCGGTGACAACACCAACGGCTGCATGTCATCC 288073 Query 107231 GGTGAACACTTCAATCCCACATAC--CAA-AATCACGGTGCGCCCGACGCCGTAGAAAGG 107287 || |||||||||| | ||| ||| | ||||| || |||| || || || | Sbjct 288074 GGGCCGCACTTCAATC---CTTACGGCAAGGAGCACGGCGCCCCCGCCGACGAGGACCGC 288130 Query 107288 CACGTCGGCGATCTGGGCAAC 107308 ||| | ||||||||||||||| Sbjct 288131 CACCTGGGCGATCTGGGCAAC 288151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412726786041767