Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq22136 150 3e-30 seq4984 131 3e-24 seq21402 125 1e-22 seq21710 116 6e-20 seq8502 100 5e-15 seq1813 100 5e-15 seq8501 96.9 5e-14 >seq22136 Length=515022 Score = 150 bits (166), Expect = 3e-30 Identities = 230/327 (70%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| ||||||| ||| ||||| ||||| | ||||| ||| Sbjct 289943 CCCTCGTCCCGGGAGATCAGTTCGTTGGAGAAGGTCAGGCCCGGCATCAAACCGCGTTTC 290002 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || |||| ||||||||| ||| ||||||||||| |||||||||||| Sbjct 290003 TTTAGCCAGAAAATGGAGGCGAAACTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAG 290062 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| || ||||| | ||| || | | || | |||||| || ||||| Sbjct 290063 GCGATGATGCGCTCCCCGAAATTGGC---GGACTTGGAGGAGATCCAGGACAGGGCCCAG 290119 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| | |||||| |||| ||| ||||||||| || || | ||| || | Sbjct 290120 TCCGCCTTGCGCTTCACCGCTGGCATCGTCTCGATGGCGTTGAACAGATAGTCTCGCTGG 290179 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 ||| ||| || ||| |||||||| || | ||| |||| ||||| | ||| || Sbjct 290180 TGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGCACGTTCTCC 290239 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||||||||||||| || || |||||| Sbjct 290240 ATGGCGATCTGGAATCCGTAGAAGCAG 290266 Score = 120 bits (132), Expect = 5e-21 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || || || || |||||||| | || | | || ||||| | Sbjct 465358 GAGAAGCGCACGGATGATATCTCTTCGTGGGACGCCGATTTCCTCAAAGTGGACCAGGGC 465299 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| || ||| ||||||| ||||||||||||||| | ||| || |||||| || | Sbjct 465298 ACCCTGTTCGAGCTGATCCTGGCCGCCAACTACCTCAATATCCAGGGCCTCCTGGACGTC 465239 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| ||||||||| | ||||||||||||| ||| |||| |||||| | || Sbjct 465238 ACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGTTGCCGCAGGAAATCCGCGACACG 465179 Query 2035746 TTTAACATCAA 2035756 || |||||| Sbjct 465178 TTCGCCATCAA 465168 Score = 113 bits (124), Expect = 7e-19 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||||||||| | |||||| |||||||||||||| || || ||||||| |||||| Sbjct 289637 TACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCCATG 289696 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCG 794026 | ||||||||| || |||| ||| || || || | | | |||| || Sbjct 289697 AAGTTGAACGGGTTCTTGGTGTTGTAGATCTT-TCCAACGCCCAATTCCACCAGCAAACG 289755 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 ||| || ||||| ||||||||||| |||||||| || ||||||||| || || || Sbjct 289756 GTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGTTTAC 289815 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 |||||| | ||| ||| ||||| | ||| || | || || || |||||||| Sbjct 289816 GGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCACGGATGATCT 289871 Score = 100 bits (110), Expect = 5e-15 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| | | || ||||||| ||||||| | | ||||||||| Sbjct 290261 AAGCAGCGGGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTA 290320 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| ||| ||||||||| ||||| || |||||| ||| ||||||||||| ||| Sbjct 290321 ACAATGCCATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCATCG 290380 Query 796261 TCGCTGAG-CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || |||| ||| ||||| | | ||| | ||||| |||||||| | ||||| Sbjct 290381 TCCTTGAGACGA-TGCCAGTCGGTCAAGTCCTTGGACAGGTCAACCTCCTCCACAGTCCA 290439 Query 796320 AAAGGAGGCCTCGGCCT 796336 || |||||||| |||| Sbjct 290440 GAAAGAGGCCTCAGCCT 290456 >seq4984 Length=20718 Score = 131 bits (144), Expect = 3e-24 Identities = 360/546 (66%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519 |||||||||||| |||||||| | ||||| | | || |||| ||||| || Sbjct 2482 GTGGATGCGCTTCTCGTAGCCCAACTGGGGCAGATACTTTTCCGAGAAGGTGAAGATTTT 2541 Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579 ||||||||| || || ||||||||||| || | |||| || |||||| |||||||| Sbjct 2542 GCGCTGGTCTACGCCACCGAACTGGGCGTCCACCTTAAGGTACTCCTCGTCCAGGGCCTG 2601 Query 2411580 CATGAGCGGGTAGACGAGGTTGCTGAGCGGCG-GGTTGCGGTCCATCT---TGACCACCT 2411635 || || || | | | | ||| || | || | | |||| || ||||||||| Sbjct 2602 CAGTCCAGGATAAAGCAAGC--CAGAGAGGAGTGGGTAC--TCCACCTGTTTGACCACCT 2657 Query 2411636 GGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTC 2411693 ||| | ||||| | ||| | ||| | | || | || | || ||| || Sbjct 2658 CGGCTCCTGCCTTCTTCGCGTCATGCTGCGTGACAACGGAGC--TTAGTTTGTAGACATC 2715 Query 2411694 GAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAG 2411753 || ||||| | | | || || |||||||| |||||| | || ||||| Sbjct 2716 CAGGGTGTACTCCTTGGACAGTTGATAGTCGCTGCCCTTCACAAACTTTAGCTTCTCCAG 2775 Query 2411754 CGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTG 2411813 ||| ||||| ||| |||||| || |||||| | ||||| | || || | Sbjct 2776 CGGAACGCCGATGGAACTGAGCATTGCTTTGATGACCTGTTCGTAGTATTGGGTACGCAG 2835 Query 2411814 CTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAG 2411873 ||| | || |||||| | ||| ||||| || | ||| |||| ||||| || || Sbjct 2836 CTCTAGCAGAGACCACGGTGCCTTCATGTTGTCCAGATAGGCATGCAGATCGGCGAACAG 2895 Query 2411874 GATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTA 2411933 |||| ||||| ||||| |||| |||||||| || | || | ||||||||||| || Sbjct 2896 GATCGTCACCTCGCATCCCGCCTTCAGAAAGTCCGCAATCTTTGACATGGGCACAAAATA 2955 Query 2411934 GCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGC 2411993 | | | ||| ||||||||||||| || || ||||| || || ||| ||||| || Sbjct 2956 GGCGACATGTGGCTTGCCCGTCGTTGCCGTTCCCCAGTATATCTTCAGATCCCGCTCCGC 3015 Query 2411994 CATGAT 2411999 || ||| Sbjct 3016 CAGGAT 3021 >seq21402 Length=104334 Score = 125 bits (138), Expect = 1e-22 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| || || ||| |||||||||||| | |||| |||||||||| | | ||| |||| Sbjct 17504 GGGTCCTCCTGGCGTGGGCAAGACCACCACCATCCAGTGCCTGGCGAGGATTCTCCTGGG 17563 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 | | | | ||||| || ||||| || ||||| || | ||||| || | || || Sbjct 17564 AGAGAGCTATAAAGAGGCTGTTCTCGAGCTAAATGCCTCTAATGAGCGAGGAATCGATGT 17623 Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTG-CCGCCCGGCCGCC 2019210 ||||| | | |||||| || | ||| | ||| | || | |||| | | Sbjct 17624 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACATTACCACGCGGCAGGC 17682 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270 | ||| | | ||||| |||||||| ||| || | ||| || ||||| |||||||||| Sbjct 17683 ATAAGATCGTGATCCTAGATGAGGCGGACAGCATGACGGAGGGTGCCCAACAGGCCCTCC 17742 Query 2019271 GATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330 | || ||||| | |||| |||||| || || || || |||||||||||||| Sbjct 17743 GCCGCACGATGGAGATCTACAGCAACACCACACGATTCGCCCTGGCCTGCAACACCAGTG 17802 Query 2019331 CGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTG 2019371 || | |||||||| || |||| ||| |||||||| ||| Sbjct 17803 AGAAGATCATCGAACCCATCCAATCCCGCTGCGCCATGTTG 17843 >seq21710 Length=1531227 Score = 116 bits (128), Expect = 6e-20 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || |||||| ||||||| | ||| | |||||||| | Sbjct 788400 GAGAAGCGCACGGATGACATTATCTCGTGGGATGCCGACTTCCTGAAAGTCGACCAGGGC 788341 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || ||| | || || || ||||| || || ||||||||| ||| || || | Sbjct 788340 ACTCTGTTCGAGCTCATACTGGCTGCCAATTATCTGGACATCAAGGGCCTACTGGAGCTC 788281 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| |||||||| | |||||||||||| | || ||||| |||||||||||| Sbjct 788280 ACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGACTCCGGAGGAGATCCGCAAGACC 788221 Query 2035746 TTTAACATCAAG 2035757 || ||||||||| Sbjct 788220 TTCAACATCAAG 788209 >seq8502 Length=4749 Score = 100 bits (110), Expect = 5e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854 ||||||||||| || | | |||||| | |||||||| | | | | | ||| Sbjct 2335 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2394 Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914 || ||| || || ||| |||| ||| ||||||| |||||||| || || |||||| Sbjct 2395 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2454 Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974 |||||||| ||| || || || || || | || | || || | |||||| |||||| Sbjct 2455 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2514 Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||||||| || ||||||||||| || Sbjct 2515 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2552 >seq1813 Length=4749 Score = 100 bits (110), Expect = 5e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854 ||||||||||| || | | |||||| | |||||||| | | | | | ||| Sbjct 2334 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2393 Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914 || ||| || || ||| |||| ||| ||||||| |||||||| || || |||||| Sbjct 2394 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2453 Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974 |||||||| ||| || || || || || | || | || || | |||||| |||||| Sbjct 2454 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2513 Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||||||| || ||||||||||| || Sbjct 2514 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2551 >seq8501 Length=20033 Score = 96.9 bits (106), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854 ||||||||||| || | | |||||| | |||||||| | | | | | ||| Sbjct 1619 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 1560 Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914 || ||| || || ||| |||| ||| ||||||| |||||||| || || |||||| Sbjct 1559 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 1500 Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974 |||||||| ||| ||| | || || || | || | || || | |||||| |||||| Sbjct 1499 TCCTTGCCAGTGTT-TTTCTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 1441 Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||||||| || ||||||||||| || Sbjct 1440 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913819038892541