Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq22136 150 3e-30
seq4984 131 3e-24
seq21402 125 1e-22
seq21710 116 6e-20
seq8502 100 5e-15
seq1813 100 5e-15
seq8501 96.9 5e-14
>seq22136
Length=515022
Score = 150 bits (166), Expect = 3e-30
Identities = 230/327 (70%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || ||||| ||||||| ||| ||||| ||||| | ||||| |||
Sbjct 289943 CCCTCGTCCCGGGAGATCAGTTCGTTGGAGAAGGTCAGGCCCGGCATCAAACCGCGTTTC 290002
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| ||||| || |||| ||||||||| ||| ||||||||||| ||||||||||||
Sbjct 290003 TTTAGCCAGAAAATGGAGGCGAAACTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAG 290062
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
||| || ||||| | ||| || | | || | |||||| || |||||
Sbjct 290063 GCGATGATGCGCTCCCCGAAATTGGC---GGACTTGGAGGAGATCCAGGACAGGGCCCAG 290119
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
|| ||||| | |||||| |||| ||| ||||||||| || || | ||| || |
Sbjct 290120 TCCGCCTTGCGCTTCACCGCTGGCATCGTCTCGATGGCGTTGAACAGATAGTCTCGCTGG 290179
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
||| ||| || ||| |||||||| || | ||| |||| ||||| | ||| ||
Sbjct 290180 TGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGCACGTTCTCC 290239
Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667
|||||||||||||| || || ||||||
Sbjct 290240 ATGGCGATCTGGAATCCGTAGAAGCAG 290266
Score = 120 bits (132), Expect = 5e-21
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| |||||||| || || || || |||||||| | || | | || ||||| |
Sbjct 465358 GAGAAGCGCACGGATGATATCTCTTCGTGGGACGCCGATTTCCTCAAAGTGGACCAGGGC 465299
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
||||| || ||| ||||||| ||||||||||||||| | ||| || |||||| || |
Sbjct 465298 ACCCTGTTCGAGCTGATCCTGGCCGCCAACTACCTCAATATCCAGGGCCTCCTGGACGTC 465239
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
|||||||| ||||||||| | ||||||||||||| ||| |||| |||||| | ||
Sbjct 465238 ACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGTTGCCGCAGGAAATCCGCGACACG 465179
Query 2035746 TTTAACATCAA 2035756
|| ||||||
Sbjct 465178 TTCGCCATCAA 465168
Score = 113 bits (124), Expect = 7e-19
Identities = 168/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
||||||||||| | |||||| |||||||||||||| || || ||||||| ||||||
Sbjct 289637 TACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCCATG 289696
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCG 794026
| ||||||||| || |||| ||| || || || | | | |||| ||
Sbjct 289697 AAGTTGAACGGGTTCTTGGTGTTGTAGATCTT-TCCAACGCCCAATTCCACCAGCAAACG 289755
Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086
||| || ||||| ||||||||||| |||||||| || ||||||||| || || ||
Sbjct 289756 GTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGTTTAC 289815
Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142
|||||| | ||| ||| ||||| | ||| || | || || || ||||||||
Sbjct 289816 GGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCACGGATGATCT 289871
Score = 100 bits (110), Expect = 5e-15
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200
|| || | |||||| | | || ||||||| ||||||| | | |||||||||
Sbjct 290261 AAGCAGCGGGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTA 290320
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
|| ||||| ||| ||||||||| ||||| || |||||| ||| ||||||||||| |||
Sbjct 290321 ACAATGCCATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCATCG 290380
Query 796261 TCGCTGAG-CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319
|| |||| ||| ||||| | | ||| | ||||| |||||||| | |||||
Sbjct 290381 TCCTTGAGACGA-TGCCAGTCGGTCAAGTCCTTGGACAGGTCAACCTCCTCCACAGTCCA 290439
Query 796320 AAAGGAGGCCTCGGCCT 796336
|| |||||||| ||||
Sbjct 290440 GAAAGAGGCCTCAGCCT 290456
>seq4984
Length=20718
Score = 131 bits (144), Expect = 3e-24
Identities = 360/546 (66%), Gaps = 12/546 (2%)
Strand=Plus/Plus
Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519
|||||||||||| |||||||| | ||||| | | || |||| ||||| ||
Sbjct 2482 GTGGATGCGCTTCTCGTAGCCCAACTGGGGCAGATACTTTTCCGAGAAGGTGAAGATTTT 2541
Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579
||||||||| || || ||||||||||| || | |||| || |||||| ||||||||
Sbjct 2542 GCGCTGGTCTACGCCACCGAACTGGGCGTCCACCTTAAGGTACTCCTCGTCCAGGGCCTG 2601
Query 2411580 CATGAGCGGGTAGACGAGGTTGCTGAGCGGCG-GGTTGCGGTCCATCT---TGACCACCT 2411635
|| || || | | | | ||| || | || | | |||| || |||||||||
Sbjct 2602 CAGTCCAGGATAAAGCAAGC--CAGAGAGGAGTGGGTAC--TCCACCTGTTTGACCACCT 2657
Query 2411636 GGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTC 2411693
||| | ||||| | ||| | ||| | | || | || | || ||| ||
Sbjct 2658 CGGCTCCTGCCTTCTTCGCGTCATGCTGCGTGACAACGGAGC--TTAGTTTGTAGACATC 2715
Query 2411694 GAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAG 2411753
|| ||||| | | | || || |||||||| |||||| | || |||||
Sbjct 2716 CAGGGTGTACTCCTTGGACAGTTGATAGTCGCTGCCCTTCACAAACTTTAGCTTCTCCAG 2775
Query 2411754 CGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTG 2411813
||| ||||| ||| |||||| || |||||| | ||||| | || || |
Sbjct 2776 CGGAACGCCGATGGAACTGAGCATTGCTTTGATGACCTGTTCGTAGTATTGGGTACGCAG 2835
Query 2411814 CTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAG 2411873
||| | || |||||| | ||| ||||| || | ||| |||| ||||| || ||
Sbjct 2836 CTCTAGCAGAGACCACGGTGCCTTCATGTTGTCCAGATAGGCATGCAGATCGGCGAACAG 2895
Query 2411874 GATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTA 2411933
|||| ||||| ||||| |||| |||||||| || | || | ||||||||||| ||
Sbjct 2896 GATCGTCACCTCGCATCCCGCCTTCAGAAAGTCCGCAATCTTTGACATGGGCACAAAATA 2955
Query 2411934 GCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGC 2411993
| | | ||| ||||||||||||| || || ||||| || || ||| ||||| ||
Sbjct 2956 GGCGACATGTGGCTTGCCCGTCGTTGCCGTTCCCCAGTATATCTTCAGATCCCGCTCCGC 3015
Query 2411994 CATGAT 2411999
|| |||
Sbjct 3016 CAGGAT 3021
>seq21402
Length=104334
Score = 125 bits (138), Expect = 1e-22
Identities = 234/341 (69%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091
||| || || ||| |||||||||||| | |||| |||||||||| | | ||| ||||
Sbjct 17504 GGGTCCTCCTGGCGTGGGCAAGACCACCACCATCCAGTGCCTGGCGAGGATTCTCCTGGG 17563
Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151
| | | | ||||| || ||||| || ||||| || | ||||| || | || ||
Sbjct 17564 AGAGAGCTATAAAGAGGCTGTTCTCGAGCTAAATGCCTCTAATGAGCGAGGAATCGATGT 17623
Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTG-CCGCCCGGCCGCC 2019210
||||| | | |||||| || | ||| | ||| | || | |||| | |
Sbjct 17624 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACATTACCACGCGGCAGGC 17682
Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270
| ||| | | ||||| |||||||| ||| || | ||| || ||||| ||||||||||
Sbjct 17683 ATAAGATCGTGATCCTAGATGAGGCGGACAGCATGACGGAGGGTGCCCAACAGGCCCTCC 17742
Query 2019271 GATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330
| || ||||| | |||| |||||| || || || || ||||||||||||||
Sbjct 17743 GCCGCACGATGGAGATCTACAGCAACACCACACGATTCGCCCTGGCCTGCAACACCAGTG 17802
Query 2019331 CGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTG 2019371
|| | |||||||| || |||| ||| |||||||| |||
Sbjct 17803 AGAAGATCATCGAACCCATCCAATCCCGCTGCGCCATGTTG 17843
>seq21710
Length=1531227
Score = 116 bits (128), Expect = 6e-20
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| |||||||| || |||||| ||||||| | ||| | |||||||| |
Sbjct 788400 GAGAAGCGCACGGATGACATTATCTCGTGGGATGCCGACTTCCTGAAAGTCGACCAGGGC 788341
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
|| || || ||| | || || || ||||| || || ||||||||| ||| || || |
Sbjct 788340 ACTCTGTTCGAGCTCATACTGGCTGCCAATTATCTGGACATCAAGGGCCTACTGGAGCTC 788281
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
|||||||| |||||||| | |||||||||||| | || ||||| ||||||||||||
Sbjct 788280 ACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGACTCCGGAGGAGATCCGCAAGACC 788221
Query 2035746 TTTAACATCAAG 2035757
|| |||||||||
Sbjct 788220 TTCAACATCAAG 788209
>seq8502
Length=4749
Score = 100 bits (110), Expect = 5e-15
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854
||||||||||| || | | |||||| | |||||||| | | | | | |||
Sbjct 2335 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2394
Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914
|| ||| || || ||| |||| ||| ||||||| |||||||| || || ||||||
Sbjct 2395 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2454
Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974
|||||||| ||| || || || || || | || | || || | |||||| ||||||
Sbjct 2455 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2514
Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||||||| || ||||||||||| ||
Sbjct 2515 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2552
>seq1813
Length=4749
Score = 100 bits (110), Expect = 5e-15
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854
||||||||||| || | | |||||| | |||||||| | | | | | |||
Sbjct 2334 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 2393
Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914
|| ||| || || ||| |||| ||| ||||||| |||||||| || || ||||||
Sbjct 2394 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 2453
Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974
|||||||| ||| || || || || || | || | || || | |||||| ||||||
Sbjct 2454 TCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 2513
Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||||||| || ||||||||||| ||
Sbjct 2514 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 2551
>seq8501
Length=20033
Score = 96.9 bits (106), Expect = 5e-14
Identities = 153/218 (70%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854
||||||||||| || | | |||||| | |||||||| | | | | | |||
Sbjct 1619 TCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACG 1560
Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914
|| ||| || || ||| |||| ||| ||||||| |||||||| || || ||||||
Sbjct 1559 CGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCC 1500
Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974
|||||||| ||| ||| | || || || | || | || || | |||||| ||||||
Sbjct 1499 TCCTTGCCAGTGTT-TTTCTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCC 1441
Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||||||| || ||||||||||| ||
Sbjct 1440 AGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACC 1403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7913819038892541
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