Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq20501 136 3e-27 seq5502 136 3e-27 seq22266 125 5e-24 seq22190 125 5e-24 >seq20501 Length=31302 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||||||||||||||| || ||| | || |||| Sbjct 11131 CAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATC 11190 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || ||||| ||| | || | || || ||||| Sbjct 11191 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 11250 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | || | ||||| |||| || ||||| Sbjct 11251 CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGT 11310 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||||||||||| || ||||||||||| Sbjct 11311 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343 >seq5502 Length=68615 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| |||||||| ||||| |||||||| ||| |||| |||| Sbjct 6291 AGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 6350 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| ||||| || || |||||||| ||| | || | ||||||||||| Sbjct 6351 TCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCC 6410 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | || || ||| || || | || |||||| Sbjct 6411 TGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTC 6470 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || ||||||||||| |||||||||||| Sbjct 6471 TTGCCAGTCAGGGTCTTTACGAAGATCTGCATG 6503 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| |||||||| ||||| |||||||| ||| |||| |||| Sbjct 6975 AGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 7034 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| ||||| || || || ||||| ||| | || | |||||||| || Sbjct 7035 TCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 7094 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | ||| | ||||| || | ||| |||||| Sbjct 7095 TGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTC 7154 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || | ||||||||| ||||| |||||| Sbjct 7155 TTTCCGGTCAAGGTCTTTACGAAGATTTGCATG 7187 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| |||||||| || || || |||| |||| Sbjct 5835 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCT 5894 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 5895 TCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 5954 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| || ||||| || | ||| ||||| Sbjct 5955 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTT 6014 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || | ||||||||| ||||| |||||| Sbjct 6015 TTTCCGGTCAAGGTCTTTACGAAGATTTGCATG 6047 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| |||||||| ||||| ||||| || ||| | || |||| Sbjct 6063 AGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCT 6122 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| |||||||| || ||||| ||| | || | ||||||||||| Sbjct 6123 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 6182 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || | ||| || |||| ||| |||| Sbjct 6183 TGGATCTTGGCCTTCAC--ATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGG 6240 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || |||||||| || ||||| |||||| Sbjct 6241 TTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6275 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| |||||||| ||||| ||||| || ||| | || |||| Sbjct 7203 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCT 7262 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| |||||||| || ||||||||| | || | |||||||| || Sbjct 7263 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCC 7322 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || | ||| || || | || |||| Sbjct 7323 TGAATCTTGGCCTTTAC--ATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGG 7380 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||||| |||||||||||||| Sbjct 7381 TCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 7414 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| |||||| || ||||| || || || | | || | || ||| Sbjct 6750 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCGTCCTCC 6809 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||| ||||| ||||| | ||| ||||| ||| | || | ||||||||||| | Sbjct 6810 AGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6869 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || || || || || |||| || | |||||| |||| ||| ||||| | Sbjct 6870 ATCTTGGCCTTCAC--ATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAATGGTTT 6927 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || |||||||| || ||||| |||||| Sbjct 6928 TGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6959 >seq22266 Length=384576 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 109172 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 109231 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 109232 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 109291 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 109292 TGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGG 109349 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || |||||||| || || || || |||||| Sbjct 109350 TCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATG 109384 >seq22190 Length=927835 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | ||| ||||||||| ||||| ||||| || | | |||| | || Sbjct 837737 CAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTC 837678 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||||| || ||||||||| | || | || |||||||| Sbjct 837677 CTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 837618 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || ||| | || | || || |||||| |||| ||| ||||| Sbjct 837617 CTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGT 837558 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||| ||||| ||||||||||||||| Sbjct 837557 CTTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837524 Score = 120 bits (132), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || | | |||| | || Sbjct 837508 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCC 837449 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| || ||||||||| | || | || |||||||| Sbjct 837448 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 837389 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || || |||||| |||| ||| |||||| Sbjct 837388 TGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAA-GGTGATGGTC 837330 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| ||||||||||||||| Sbjct 837329 TTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837297 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || | | |||| |||| Sbjct 837281 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCT 837222 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || |||||||||||||||| ||| ||||||||| | || | ||||||||||| Sbjct 837221 TCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 837162 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | ||| || || | || |||||| Sbjct 837161 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTC 837102 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| ||||| || |||||| Sbjct 837101 TTGCCGGTCAAAGTCTTCACAAAAATTTGCATG 837069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325602222694961