Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq20501 136 3e-27
seq5502 136 3e-27
seq22266 125 5e-24
seq22190 125 5e-24
>seq20501
Length=31302
Score = 136 bits (150), Expect = 3e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | ||| ||||||||||||||||||||| || ||| | || ||||
Sbjct 11131 CAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATC 11190
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| || ||||||||||| || ||||| ||| | || | || || |||||
Sbjct 11191 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 11250
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | | || | || | ||||| |||| || |||||
Sbjct 11251 CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGT 11310
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| |||||||||||||| || |||||||||||
Sbjct 11311 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
>seq5502
Length=68615
Score = 136 bits (150), Expect = 3e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| |||||||| ||||| |||||||| ||| |||| ||||
Sbjct 6291 AGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 6350
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||||||| ||||| || || |||||||| ||| | || | |||||||||||
Sbjct 6351 TCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCC 6410
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || || | | || | || || ||| || || | || ||||||
Sbjct 6411 TGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTC 6470
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || || ||||||||||| ||||||||||||
Sbjct 6471 TTGCCAGTCAGGGTCTTTACGAAGATCTGCATG 6503
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| |||||||| ||||| |||||||| ||| |||| ||||
Sbjct 6975 AGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 7034
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| ||||| || || || ||||| ||| | || | |||||||| ||
Sbjct 7035 TCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 7094
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || || | | || | ||| | ||||| || | ||| ||||||
Sbjct 7095 TGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTC 7154
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || | ||||||||| ||||| ||||||
Sbjct 7155 TTTCCGGTCAAGGTCTTTACGAAGATTTGCATG 7187
Score = 118 bits (130), Expect = 7e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| |||||||| || || || |||| ||||
Sbjct 5835 AGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCT 5894
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| ||||||||||||| || ||||| ||| | || | |||||||||||
Sbjct 5895 TCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 5954
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| || ||||| || | ||| |||||
Sbjct 5955 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTT 6014
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || | ||||||||| ||||| ||||||
Sbjct 6015 TTTCCGGTCAAGGTCTTTACGAAGATTTGCATG 6047
Score = 116 bits (128), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| |||||||| ||||| ||||| || ||| | || ||||
Sbjct 6063 AGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCT 6122
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| |||||||| || ||||| ||| | || | |||||||||||
Sbjct 6123 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 6182
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || |||| || | ||| || |||| ||| ||||
Sbjct 6183 TGGATCTTGGCCTTCAC--ATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGG 6240
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || || || |||||||| || ||||| ||||||
Sbjct 6241 TTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6275
Score = 114 bits (126), Expect = 8e-21
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| |||| |||||||| ||||| ||||| || ||| | || ||||
Sbjct 7203 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCT 7262
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| |||||||| || ||||||||| | || | |||||||| ||
Sbjct 7263 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCC 7322
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || |||| || | ||| || || | || ||||
Sbjct 7323 TGAATCTTGGCCTTTAC--ATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGG 7380
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || | ||||| ||||||||||||||
Sbjct 7381 TCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 7414
Score = 102 bits (112), Expect = 5e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| |||||| || ||||| || || || | | || | || |||
Sbjct 6750 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCGTCCTCC 6809
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||| ||||| ||||| | ||| ||||| ||| | || | ||||||||||| |
Sbjct 6810 AGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6869
Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946
|| || || || || || |||| || | |||||| |||| ||| ||||| |
Sbjct 6870 ATCTTGGCCTTCAC--ATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAATGGTTT 6927
Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || || |||||||| || ||||| ||||||
Sbjct 6928 TGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6959
>seq22266
Length=384576
Score = 125 bits (138), Expect = 5e-24
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| |||| ||| ||||||||| ||||| |||||||| ||| |||| ||||
Sbjct 109172 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 109231
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| |||||||||||||| || ||||| ||| | || | |||||||||||
Sbjct 109232 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 109291
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | || | ||| || || | ||| ||||
Sbjct 109292 TGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGG 109349
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||| || |||||||| || || || || ||||||
Sbjct 109350 TCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATG 109384
>seq22190
Length=927835
Score = 125 bits (138), Expect = 5e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| || | ||| ||||||||| ||||| ||||| || | | |||| | ||
Sbjct 837737 CAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTC 837678
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| ||||| || || ||||||| || ||||||||| | || | || ||||||||
Sbjct 837677 CTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 837618
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| || ||| | || | || || |||||| |||| ||| |||||
Sbjct 837617 CTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGT 837558
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||| || ||||| ||||| |||||||||||||||
Sbjct 837557 CTTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837524
Score = 120 bits (132), Expect = 2e-22
Identities = 155/213 (73%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||| ||||| || | | |||| | ||
Sbjct 837508 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCC 837449
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || || ||||||| || ||||||||| | || | || ||||||||
Sbjct 837448 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 837389
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| || ||| | || | || || |||||| |||| ||| ||||||
Sbjct 837388 TGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAA-GGTGATGGTC 837330
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || ||||| ||||| |||||||||||||||
Sbjct 837329 TTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837297
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||| ||||| || | | |||| ||||
Sbjct 837281 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCT 837222
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || |||||||||||||||| ||| ||||||||| | || | |||||||||||
Sbjct 837221 TCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 837162
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | || | ||| || || | || ||||||
Sbjct 837161 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTC 837102
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || || | ||||| ||||| || ||||||
Sbjct 837101 TTGCCGGTCAAAGTCTTCACAAAAATTTGCATG 837069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325602222694961
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