Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq22228 93.3 3e-14 seq5502 86.0 5e-12 seq22266 82.4 6e-11 >seq22228 Length=358660 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || |||||||| || ||||| ||||||||||| || | || ||||||||||| ||| || Sbjct 288014 GGTCTGCACGGATTCCACGTGCACGAGTTCGGTGACAACACCAACGGCTGCATGTCATCC 288073 Query 105141 GGCGAGCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCA 105199 || ||||||||| || |||| || | | |||||||| || | || || || | || Sbjct 288074 GGGCCGCACTTCAATCCTTACG-GCAAGGAGCACGGCGCCCCCGCCGACGAGGACCGCCA 288132 Query 105200 CGTCGGCGACCTGGGCAA 105217 | | ||||| |||||||| Sbjct 288133 CCTGGGCGATCTGGGCAA 288150 >seq5502 Length=68615 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| || || || || ||||| |||||||| | || |||| || Sbjct 7417 AAAATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCT 7358 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | ||||| |||||| ||||| || ||| | ||| || Sbjct 7357 TCCGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGAC 7298 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || ||||| || || | ||| | | |||||| Sbjct 7297 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTAC 7238 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || ||||| || || | ||| |||| Sbjct 7237 AACATCCAGAAGGAATCCACCCTTCACTTGGT 7206 >seq22266 Length=384576 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || ||||| | || ||||| ||||| ||| | || |||| || Sbjct 109383 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 109324 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| |||||| Sbjct 109323 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 109264 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || || ||||||||||| Sbjct 109263 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAAC 109204 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | || ||||| Sbjct 109203 ATCCAGAAGGAGTCGACCCTTCATCTGGTG 109174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398765869744291