Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq22344 96.9 3e-14
seq21827 93.3 3e-13
>seq22344
Length=193125
Score = 96.9 bits (106), Expect = 3e-14
Identities = 178/261 (68%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679
|| ||||| | ||||| || || || ||| ||| | ||| | | |||||| |
Sbjct 188865 AAGGGCCAGTGCTTCATGTCGGACTGCACAGCGGAGTCTTCAAACTTGCGACCAATCAGA 188924
Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739
|| || ||||| || || || | ||| || || | || | || | ||||| || ||
Sbjct 188925 CGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCGTCA 188984
Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799
|| |||||| | || || || || || | |||||| |||||||| || |||||||| ||
Sbjct 188985 CCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGG 189044
Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859
|| || || || || || || || |||| || | || || || || | || ||
Sbjct 189045 TCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACGCCCACGCACGAGTAGGTGGTG 189104
Query 282860 CCTAAATCAATACCAATAGCA 282880
|| ||||||||||||| ||||
Sbjct 189105 CCCAAATCAATACCAACAGCA 189125
>seq21827
Length=194424
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185
||||| | || || || || || || ||| |||||||| |||| ||||| |||| ||
Sbjct 172183 GTCGACTTCTCCTCGCCCAACATCGCCAAACAAATGCATGTTGGTCATTTGCGATCCACA 172242
Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245
|||||||| ||||| | ||| || | ||||| | | ||||| || ||| |
Sbjct 172243 ATTATTGGCGAATCGGTATGTCGGCTTCTAGAATTTCTTCAGCACGACGTGATCCGTGTC 172302
Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289
|||||| | |||||||||||||| || || || ||| |||||||
Sbjct 172303 AATCATCTTGGTGATTGGGGAACACAGTTTGGCATGCTAATTGC 172346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739510083533094
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |