Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq22344 96.9 3e-14 seq21827 93.3 3e-13 >seq22344 Length=193125 Score = 96.9 bits (106), Expect = 3e-14 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||| | ||||| || || || ||| ||| | ||| | | |||||| | Sbjct 188865 AAGGGCCAGTGCTTCATGTCGGACTGCACAGCGGAGTCTTCAAACTTGCGACCAATCAGA 188924 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 || || ||||| || || || | ||| || || | || | || | ||||| || || Sbjct 188925 CGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCGTCA 188984 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 || |||||| | || || || || || | |||||| |||||||| || |||||||| || Sbjct 188985 CCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGG 189044 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 || || || || || || || || |||| || | || || || || | || || Sbjct 189045 TCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACGCCCACGCACGAGTAGGTGGTG 189104 Query 282860 CCTAAATCAATACCAATAGCA 282880 || ||||||||||||| |||| Sbjct 189105 CCCAAATCAATACCAACAGCA 189125 >seq21827 Length=194424 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 ||||| | || || || || || || ||| |||||||| |||| ||||| |||| || Sbjct 172183 GTCGACTTCTCCTCGCCCAACATCGCCAAACAAATGCATGTTGGTCATTTGCGATCCACA 172242 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 |||||||| ||||| | ||| || | ||||| | | ||||| || ||| | Sbjct 172243 ATTATTGGCGAATCGGTATGTCGGCTTCTAGAATTTCTTCAGCACGACGTGATCCGTGTC 172302 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||||| | |||||||||||||| || || || ||| ||||||| Sbjct 172303 AATCATCTTGGTGATTGGGGAACACAGTTTGGCATGCTAATTGC 172346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739510083533094