Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq20501 159 7e-34 seq5502 159 7e-34 seq22190 107 4e-18 seq22430 93.3 8e-14 >seq20501 Length=31302 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || |||||| || ||||||| ||| || || ||||| || ||||| ||||| Sbjct 11116 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 11175 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 11176 GAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 11235 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || || || ||||| || Sbjct 11236 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGAC 11295 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 11296 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343 >seq5502 Length=68615 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || ||||| ||||| || || || || || || | | || Sbjct 6971 ACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 7030 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || |||||||| || || || | || |||||||| || ||||| ||||| Sbjct 7031 ATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 7090 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| || || ||||||||||| || ||| ||||| |||||||| || || Sbjct 7091 ATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGAT 7150 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| |||||||| || || ||||| Sbjct 7151 GGTCTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| || || ||||| ||||| || || || || || || | | || Sbjct 6516 CGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCA 6575 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || |||||||| || || || | || |||||||| || ||||| |||||| Sbjct 6576 TCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTA 6635 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||||||||| || ||| || || ||||| | ||| || Sbjct 6636 TCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATG 6695 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| |||||||| || || ||||| Sbjct 6696 GTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| || || ||||| ||||| || || || || || || | | || Sbjct 6288 CGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 6347 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| |||||||| || || || | ||| |||||||| || || || ||||| Sbjct 6348 TCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTG 6407 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||||||||| || || || || || |||| || || Sbjct 6408 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATG 6467 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||||| || |||||||| Sbjct 6468 GTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 >seq22190 Length=927835 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || || |||| ||| || || ||||| || || || || || Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || | || || ||||||||||| | | || || ||||| || Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || || || || || || ||||| ||||| || || || Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACC 837572 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 837571 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 104 bits (114), Expect = 5e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || ||||| || ||||| || || || || || Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || | || || ||||||||||| | | || || ||||| || Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || || || || || || || || ||||| || || || Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 837344 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || || |||||||| || | ||||| ||||| |||||||| Sbjct 837343 T-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq22430 Length=315411 Score = 93.3 bits (102), Expect = 8e-14 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 198354 CAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAA 198413 ||| | ||| || | | || || || ||||| | || ||| | ||||| ||||| ||| Sbjct 156974 CAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGCATGTATTGGGCCAAA 157033 Query 198414 AAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAAC 198473 ||||| || |||||||| || |||||| | || ||| ||| ||| || ||| Sbjct 157034 AAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTATGCGATCCTACTGAAC 157093 Query 198474 AATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTAT 198532 | ||||| || || || ||| ||||| ||||| || || || ||||||||||| || Sbjct 157094 GACAAGTATAGCCTCGATGG-ACGCGATCCCAACGGCTATGTGGGCTGTATGTGGTCCAT 157152 Query 198533 TTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATAT 198592 |||| | |||||| | ||||| ||| | | || || || ||| | | || || Sbjct 157153 CGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGGAAAGGTTCGGTACAT 157212 Query 198593 GAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 ||| ||| |||| | | ||||||||||| Sbjct 157213 GAACTATCAGGGCTGCCGGCGCAAATTTGATGT 157245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981540144715641