Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq20501 159 7e-34
seq5502 159 7e-34
seq22190 107 4e-18
seq22430 93.3 8e-14
>seq20501
Length=31302
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || |||||| || ||||||| ||| || || ||||| || ||||| |||||
Sbjct 11116 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 11175
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || || || ||||| ||||| || | || |||||||||||
Sbjct 11176 GAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 11235
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|||||||| || || |||||||| ||||| |||||||| || || || ||||| ||
Sbjct 11236 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGAC 11295
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| || |||||||| || | ||||| || || ||||||||
Sbjct 11296 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
>seq5502
Length=68615
Score = 159 bits (176), Expect = 7e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| ||||| || || ||||| ||||| || || || || || || | | ||
Sbjct 6971 ACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 7030
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | || |||||||| || || || | || |||||||| || ||||| |||||
Sbjct 7031 ATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 7090
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||||||| || || ||||||||||| || ||| ||||| |||||||| || ||
Sbjct 7091 ATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGAT 7150
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| |||||||| || || |||||
Sbjct 7151 GGTCTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186
Score = 145 bits (160), Expect = 1e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| ||||| || || ||||| ||||| || || || || || || | | ||
Sbjct 6516 CGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCA 6575
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | || |||||||| || || || | || |||||||| || ||||| ||||||
Sbjct 6576 TCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTA 6635
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| || || ||||||||||| || ||| || || ||||| | ||| ||
Sbjct 6636 TCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATG 6695
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| |||||||| || || |||||
Sbjct 6696 GTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 140 bits (154), Expect = 6e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| ||||| || || ||||| ||||| || || || || || || | | ||
Sbjct 6288 CGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 6347
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | ||| |||||||| || || || | ||| |||||||| || || || |||||
Sbjct 6348 TCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTG 6407
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || ||||||||||| || || || || || |||| || ||
Sbjct 6408 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATG 6467
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| |||| |||||||| || ||||||||
Sbjct 6468 GTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
>seq22190
Length=927835
Score = 107 bits (118), Expect = 4e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || |||||| || || |||| ||| || || ||||| || || || || ||
Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | ||||| || | || || ||||||||||| | | || || ||||| ||
Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || || || || || ||||| ||||| || || ||
Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACC 837572
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | ||||| ||||| ||||||||
Sbjct 837571 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 104 bits (114), Expect = 5e-17
Identities = 160/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || ||||| || ||||| || ||||| || || || || ||
Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | ||||| || | || || ||||||||||| | | || || ||||| ||
Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || || || || || || || || || ||||| || || ||
Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 837344
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||| || || |||||||| || | ||||| ||||| ||||||||
Sbjct 837343 T-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
>seq22430
Length=315411
Score = 93.3 bits (102), Expect = 8e-14
Identities = 186/273 (68%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 198354 CAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAA 198413
||| | ||| || | | || || || ||||| | || ||| | ||||| ||||| |||
Sbjct 156974 CAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGCATGTATTGGGCCAAA 157033
Query 198414 AAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAAC 198473
||||| || |||||||| || |||||| | || ||| ||| ||| || |||
Sbjct 157034 AAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTATGCGATCCTACTGAAC 157093
Query 198474 AATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTAT 198532
| ||||| || || || ||| ||||| ||||| || || || ||||||||||| ||
Sbjct 157094 GACAAGTATAGCCTCGATGG-ACGCGATCCCAACGGCTATGTGGGCTGTATGTGGTCCAT 157152
Query 198533 TTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATAT 198592
|||| | |||||| | ||||| ||| | | || || || ||| | | || ||
Sbjct 157153 CGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGGAAAGGTTCGGTACAT 157212
Query 198593 GAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625
||| ||| |||| | | |||||||||||
Sbjct 157213 GAACTATCAGGGCTGCCGGCGCAAATTTGATGT 157245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981540144715641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |