Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq22430 107 3e-18 >seq22430 Length=315411 Score = 107 bits (118), Expect = 3e-18 Identities = 198/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 183022 CTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGA 183081 || ||||| | ||||| | ||| || || | || || || ||||| | || ||||| Sbjct 156959 CTGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGC 157018 Query 183082 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTAT 183141 ||||| ||||| |||||||| || |||||||| || |||||| | || ||| ||| Sbjct 157019 ATGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTAT 157078 Query 183142 AGTATCTATATGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTAGG 183200 ||| ||||| | ||||| || || || ||| ||||| ||||| || || || Sbjct 157079 GCGATCCTACTGAACGACAAGTATAGCCTCGATGG-ACGCGATCCCAACGGCTATGTGGG 157137 Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGG 183260 ||||||||||| || |||| | || |||| | ||||| ||| | | || || || Sbjct 157138 CTGTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGG 157197 Query 183261 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308 |||| | | || ||||| ||| || | | | ||||||||||| Sbjct 157198 AAAGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGT 157245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903153513247840