Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq22430 107 3e-18
>seq22430
Length=315411
Score = 107 bits (118), Expect = 3e-18
Identities = 198/288 (69%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 183022 CTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGA 183081
|| ||||| | ||||| | ||| || || | || || || ||||| | || |||||
Sbjct 156959 CTGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGC 157018
Query 183082 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTAT 183141
||||| ||||| |||||||| || |||||||| || |||||| | || ||| |||
Sbjct 157019 ATGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTAT 157078
Query 183142 AGTATCTATATGAACAATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTAGG 183200
||| ||||| | ||||| || || || ||| ||||| ||||| || || ||
Sbjct 157079 GCGATCCTACTGAACGACAAGTATAGCCTCGATGG-ACGCGATCCCAACGGCTATGTGGG 157137
Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGG 183260
||||||||||| || |||| | || |||| | ||||| ||| | | || || ||
Sbjct 157138 CTGTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGG 157197
Query 183261 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 183308
|||| | | || ||||| ||| || | | | |||||||||||
Sbjct 157198 AAAGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGT 157245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903153513247840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |