Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 116 2e-21
seq5502 105 4e-18
seq20501 102 5e-17
seq22266 82.4 5e-11
>seq22190
Length=927835
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | |||||||| | |||| ||| || || |||||||| |||||
Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| |||| ||||| || || || ||||| |||||||||||||| ||| | ||
Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| ||||| ||| || | || | ||| ||| | || ||
Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTC-ACGTTCTCAATGGTATCGGAGGGCTCGAC 837573
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||||||||||||
Sbjct 837572 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 107 bits (118), Expect = 1e-18
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || ||| | |||||| || || || ||| || || |||||||| |||||
Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| |||| ||||| || || || ||||| |||||||||||||| ||| | ||
Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| ||||| ||| || | || | ||| ||| | || ||
Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTC-ACGTTCTCGATGGTATCGGAGGGCTCGAC 837345
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||||||||||||
Sbjct 837344 CTCAA-GGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | |||||| || || || ||| || || |||||||| |||||
Sbjct 837296 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837237
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| | || |||| ||||||||||| || ||||| |||||||| ||| | ||
Sbjct 837236 AAGGTGCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 837177
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || ||| || | || | ||| ||| | || ||
Sbjct 837176 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCGGAAGGCTCAAC 837118
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755
|| | ||||| || || || || || || || ||||| || ||||| |||||
Sbjct 837117 CTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCAT-GTTGG 837065
>seq5502
Length=68615
Score = 105 bits (116), Expect = 4e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || | |||| ||| || || ||||| |||||||| || |||||| |
Sbjct 5831 ACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCC 5890
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| ||||| || || ||||| || |||||||||||||||||| | || | || || ||
Sbjct 5891 ATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 5950
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| || || ||| || | || | ||| || | ||| || || | ||||
Sbjct 5951 GTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGA 6009
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| ||||| || || || || ||||| ||||| |||||
Sbjct 6010 TGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 102 bits (112), Expect = 5e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || ||| || || || |||||||| ||||| || ||||| | || |||
Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
|| || ||||| || ||||| | ||||||||||||| | || | || || || || |
Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 6641
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || ||| |||| || | |||||| || ||||| || | ||||| |||||
Sbjct 6642 ATCTTAGCCTTC-ACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTT 6700
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || || ||||| ||||| |||||
Sbjct 6701 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| || ||||| || || || ||| ||||| ||||||||||| ||
Sbjct 6732 CCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGAC 6791
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| ||| || |||||||| || || |||||||||||| | ||
Sbjct 6792 AACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGA 6851
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| || || ||| |||| || | |||||| || || ||
Sbjct 6852 ATACCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATCGTGTCGGATGGCTCGAC 6910
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| || || ||||| || || | || || || ||||| |||||
Sbjct 6911 CTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || || ||| || || || |||||||| |||||
Sbjct 6048 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 6107
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || ||| | || || | || || |||||||| |||| ||||||||||||| | ||
Sbjct 6108 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6167
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || ||||| || || ||| |||| || | |||||| || |||||
Sbjct 6168 ATACCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATCGTGTCGGATGGCTCCAC 6226
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| || || ||||| || || | || || || ||||| |||||
Sbjct 6227 CTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || || ||| || || || |||||||| || ||
Sbjct 6960 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 7019
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || ||||| || ||||| || ||||| | ||||||||||||| | ||
Sbjct 7020 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 7079
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || || || ||| || ||| |||| || | |||||| || ||| ||
Sbjct 7080 ATTCCCTCCTTATCCTGAATCTTAGCCTTC-ACATTTTCAATGGTGTCAGATGGTTCGAC 7138
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || ||||| ||||| |||||
Sbjct 7139 TTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || ||| || || || |||||||| || || || ||||| | || |||
Sbjct 6294 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 6353
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
||||| ||||| || ||||| | ||| ||||||||| | || | || || |||||
Sbjct 6354 AATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGG 6413
Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719
|| || |||| ||| ||| ||||||| | || || || | ||| || || ||
Sbjct 6414 ATCTTGGCCTTCA-CATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTCTT 6472
Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || ||||| |||||||||||
Sbjct 6473 GCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
>seq20501
Length=31302
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || ||| | |||||| || | |||| ||| || || ||||| || || |
Sbjct 11115 CACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAG 11174
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|||| || || | || |||| || || || || || |||| ||||||||||||| | |
Sbjct 11175 AGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 11234
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| ||| || | || |||| || | ||||| | |||
Sbjct 11235 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTGTCCGACGGTTCG 11293
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || || || || | || || || |||||||||||
Sbjct 11294 ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
>seq22266
Length=384576
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | ||||| ||| || || ||| || || |||||||| || ||
Sbjct 109156 ACCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 109215
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || ||||| || |||| ||||||||||||| | ||
Sbjct 109216 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 109275
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || || ||| |||| || | |||||| | ||||
Sbjct 109276 AATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCCGAAGGCTCCA 109334
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
| || | ||||| || || || || | ||||| || || || ||||| ||
Sbjct 109335 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATGGT 109386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328612585260480
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