Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq22190 116 2e-21 seq5502 105 4e-18 seq20501 102 5e-17 seq22266 82.4 5e-11 >seq22190 Length=927835 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||||| | |||| ||| || || |||||||| ||||| Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| ||| || | || | ||| ||| | || || Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTC-ACGTTCTCAATGGTATCGGAGGGCTCGAC 837573 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 837572 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 107 bits (118), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || || || ||| || || |||||||| ||||| Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| ||| || | || | ||| ||| | || || Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTC-ACGTTCTCGATGGTATCGGAGGGCTCGAC 837345 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 837344 CTCAA-GGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | |||||| || || || ||| || || |||||||| ||||| Sbjct 837296 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837237 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||| ||||||||||| || ||||| |||||||| ||| | || Sbjct 837236 AAGGTGCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 837177 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| || | || | ||| ||| | || || Sbjct 837176 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCGGAAGGCTCAAC 837118 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 || | ||||| || || || || || || || ||||| || ||||| ||||| Sbjct 837117 CTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCAT-GTTGG 837065 >seq5502 Length=68615 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | |||| ||| || || ||||| |||||||| || |||||| | Sbjct 5831 ACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCC 5890 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || || ||||| || |||||||||||||||||| | || | || || || Sbjct 5891 ATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 5950 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || ||| || | || | ||| || | ||| || || | |||| Sbjct 5951 GTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGA 6009 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || || || ||||| ||||| ||||| Sbjct 6010 TGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || || || |||||||| ||||| || ||||| | || ||| Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || ||||| || ||||| | ||||||||||||| | || | || || || || | Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 6641 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || ||| |||| || | |||||| || ||||| || | ||||| ||||| Sbjct 6642 ATCTTAGCCTTC-ACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTT 6700 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||| ||||| ||||| Sbjct 6701 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || ||||| || || || ||| ||||| ||||||||||| || Sbjct 6732 CCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGAC 6791 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| ||| || |||||||| || || |||||||||||| | || Sbjct 6792 AACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGA 6851 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || ||| |||| || | |||||| || || || Sbjct 6852 ATACCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATCGTGTCGGATGGCTCGAC 6910 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | || || || ||||| ||||| Sbjct 6911 CTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| || || || |||||||| ||||| Sbjct 6048 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 6107 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | || || |||||||| |||| ||||||||||||| | || Sbjct 6108 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6167 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || ||| |||| || | |||||| || ||||| Sbjct 6168 ATACCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATCGTGTCGGATGGCTCCAC 6226 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | || || || ||||| ||||| Sbjct 6227 CTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| || || || |||||||| || || Sbjct 6960 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 7019 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| || ||||| || ||||| | ||||||||||||| | || Sbjct 7020 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 7079 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || ||| |||| || | |||||| || ||| || Sbjct 7080 ATTCCCTCCTTATCCTGAATCTTAGCCTTC-ACATTTTCAATGGTGTCAGATGGTTCGAC 7138 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || ||||| ||||| ||||| Sbjct 7139 TTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || || || |||||||| || || || ||||| | || ||| Sbjct 6294 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 6353 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| || ||||| | ||| ||||||||| | || | || || ||||| Sbjct 6354 AATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGG 6413 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| ||| ||| ||||||| | || || || | ||| || || || Sbjct 6414 ATCTTGGCCTTCA-CATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTCTT 6472 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| ||||||||||| Sbjct 6473 GCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 >seq20501 Length=31302 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | |||||| || | |||| ||| || || ||||| || || | Sbjct 11115 CACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAG 11174 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| || || | || |||| || || || || || |||| ||||||||||||| | | Sbjct 11175 AGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 11234 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || | || |||| || | ||||| | ||| Sbjct 11235 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTGTCCGACGGTTCG 11293 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 11294 ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343 >seq22266 Length=384576 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||||| ||| || || ||| || || |||||||| || || Sbjct 109156 ACCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 109215 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || ||||| || |||| ||||||||||||| | || Sbjct 109216 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 109275 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || ||| |||| || | |||||| | |||| Sbjct 109276 AATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATGGTGTCCGAAGGCTCCA 109334 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || || || || | ||||| || || || ||||| || Sbjct 109335 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATGGT 109386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328612585260480