Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 109 1e-18
seq22190 104 6e-17
seq22266 98.7 2e-15
seq20501 87.8 4e-12
>seq5502
Length=68615
Score = 109 bits (120), Expect = 1e-18
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| |||||||| ||||| |||||||| ||| ||||| || | || || |||
Sbjct 6022 ACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCTGATACCATTGAGAACGTGAAGGCC 5963
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || |||||| || || || | | ||||||||||| |||
Sbjct 5962 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAG 5903
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||||||||||||||| | ||| || ||||||| ||| ||||||| ||||| ||| | |||
Sbjct 5902 CAGTTGGAAGATGGACGCACTCTGTCCGATTATAACATCCAGAAGGAGTCCACTTTGCAC 5843
Score = 107 bits (118), Expect = 5e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| |||||||| |||||| | |||||||| |||||||| | ||| || |||
Sbjct 6706 ACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCTGACACCATTGAAAATGTGAAGGCT 6647
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || || |||||| || || || | || || ||||| ||||||
Sbjct 6646 AAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTCATTTTCGCTGGAAAG 6587
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||||||||| | || | |||| |||||| ||||||| || || || ||||||
Sbjct 6586 CAGTTGGAAGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAATCCACCCTTCAC 6527
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| | |||| ||
Sbjct 6526 TTGGTTCTCCGACTCCG 6510
Score = 104 bits (114), Expect = 6e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| || ||||| |||||||| ||| |||||||| | ||| || |||
Sbjct 7162 ACCGGAAAGACCATCACCTTGGAAGTCGAACCATCTGACACCATTGAAAATGTGAAGGCT 7103
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || || |||||| || || || | || || ||||| ||||||
Sbjct 7102 AAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTCATTTTCGCTGGAAAG 7043
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||||||||| | || | | || |||||| ||||||| || || || ||||||
Sbjct 7042 CAGTTGGAAGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAATCCACCCTTCAC 6983
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| | | |||||
Sbjct 6982 TTGGTTCTCCGTCTTCG 6966
>seq22190
Length=927835
Score = 104 bits (114), Expect = 6e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||||||||| || || ||| || || | || || |||
Sbjct 837094 ACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGATACCATTGAGAACGTGAAGGCC 837153
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || |||||| || ||| || || | ||||||||||||||
Sbjct 837154 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAA 837213
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| ||||||||||| | || ||| |||| |||||| ||||||| |||||||| || |||
Sbjct 837214 CAGCTGGAAGATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 837273
Score = 84.2 bits (92), Expect = 5e-11
Identities = 140/201 (70%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || ||||| || || || ||||| ||| | || || || ||
Sbjct 837301 CAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCTTG-AGGTCGAGCCCTCCGAT 837359
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| || || || || || ||||| ||| || ||| ||
Sbjct 837360 ACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 837419
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||| || || ||||||||||| || ||| | || ||| |||| |||||| ||
Sbjct 837420 CGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACAACATC 837479
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| |||||||| || |||
Sbjct 837480 CAGAAGGAGTCTACCCTCCAC 837500
>seq22266
Length=384576
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || ||||| ||||| ||||| ||| ||||| ||||
Sbjct 109368 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGACACCATCGAGAAT 109309
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || ||| || || || | || ||||||
Sbjct 109308 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 109249
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | || || | || |||||| ||||||| |||||
Sbjct 109248 GCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAGGAGTCG 109189
Query 206365 ACTCTTCACCTTGT 206378
|| ||||| || ||
Sbjct 109188 ACCCTTCATCTGGT 109175
>seq20501
Length=31302
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || |||||| | || || ||| || ||||| |||||
Sbjct 11328 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGACACTATCGAAAAT 11269
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || |||||| || |||||||||||| || || || | || |||||
Sbjct 11268 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 11210
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||| |||||||||| | || | | || || ||| | ||||| |||||
Sbjct 11209 CGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAACATTCAGAAGGAGTC 11150
Query 206364 TACTCTTCAC 206373
||| | |||
Sbjct 11149 CACTTTGCAC 11140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181475272899299
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |