Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5502 109 1e-18 seq22190 104 6e-17 seq22266 98.7 2e-15 seq20501 87.8 4e-12 >seq5502 Length=68615 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| ||||| |||||||| ||| ||||| || | || || ||| Sbjct 6022 ACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCTGATACCATTGAGAACGTGAAGGCC 5963 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || || || | | ||||||||||| ||| Sbjct 5962 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAG 5903 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||| | ||| || ||||||| ||| ||||||| ||||| ||| | ||| Sbjct 5902 CAGTTGGAAGATGGACGCACTCTGTCCGATTATAACATCCAGAAGGAGTCCACTTTGCAC 5843 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| |||||| | |||||||| |||||||| | ||| || ||| Sbjct 6706 ACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCTGACACCATTGAAAATGTGAAGGCT 6647 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || |||||| || || || | || || ||||| |||||| Sbjct 6646 AAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTCATTTTCGCTGGAAAG 6587 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || | |||| |||||| ||||||| || || || |||||| Sbjct 6586 CAGTTGGAAGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAATCCACCCTTCAC 6527 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | |||| || Sbjct 6526 TTGGTTCTCCGACTCCG 6510 Score = 104 bits (114), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| |||||||| ||| |||||||| | ||| || ||| Sbjct 7162 ACCGGAAAGACCATCACCTTGGAAGTCGAACCATCTGACACCATTGAAAATGTGAAGGCT 7103 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || |||||| || || || | || || ||||| |||||| Sbjct 7102 AAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTCATTTTCGCTGGAAAG 7043 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || | | || |||||| ||||||| || || || |||||| Sbjct 7042 CAGTTGGAAGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAATCCACCCTTCAC 6983 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 6982 TTGGTTCTCCGTCTTCG 6966 >seq22190 Length=927835 Score = 104 bits (114), Expect = 6e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||||||||| || || ||| || || | || || ||| Sbjct 837094 ACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGATACCATTGAGAACGTGAAGGCC 837153 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || ||| || || | |||||||||||||| Sbjct 837154 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAA 837213 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | || ||| |||| |||||| ||||||| |||||||| || ||| Sbjct 837214 CAGCTGGAAGATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 837273 Score = 84.2 bits (92), Expect = 5e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| ||| | || || || || Sbjct 837301 CAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCTTG-AGGTCGAGCCCTCCGAT 837359 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || || || || ||||| ||| || ||| || Sbjct 837360 ACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 837419 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || ||||||||||| || ||| | || ||| |||| |||||| || Sbjct 837420 CGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACAACATC 837479 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| |||||||| || ||| Sbjct 837480 CAGAAGGAGTCTACCCTCCAC 837500 >seq22266 Length=384576 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||| ||||| |||| Sbjct 109368 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGACACCATCGAGAAT 109309 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 109308 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 109249 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 109248 GCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAGGAGTCG 109189 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 109188 ACCCTTCATCTGGT 109175 >seq20501 Length=31302 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || ||||| ||||| Sbjct 11328 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGACACTATCGAAAAT 11269 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 11268 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 11210 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 11209 CGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAACATTCAGAAGGAGTC 11150 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 11149 CACTTTGCAC 11140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181475272899299