Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq6805 91.5 4e-14 >seq6805 Length=4081 Score = 91.5 bits (100), Expect = 4e-14 Identities = 306/474 (65%), Gaps = 2/474 (0%) Strand=Plus/Plus Query 32397 ATCGACAACGAGCGCGGTTTCTGGTGGTCACCATCAAACCAGGAAATCTATGGCATCCAG 32456 || |||| ||| | || || ||| ||||| |||||| | || || |||| || Sbjct 3609 ATAGACAGCGAACAAGGCTTATGGCATTCACCTTCAAACAAAGAGATAAATGGTATTGTT 3668 Query 32457 GGCACGGCCAGAACCATTGATTTCACCCTGGGTGACACGTCCAGCCGTGCAAACCTGCTG 32516 || || ||| | |||||||| || || ||| | || | | ||||||| | Sbjct 3669 GGAACAAGCAGGCCTATTGATTTTACGCTCGGTAATACAAATTGTAGAGCAAACCATTTA 3728 Query 32517 AACGAAAACGAAGTCACCACCATCATTCGCCAGGACGGTTTCCGCCTGTGGGGCAACCGC 32576 || ||||| ||||| || || || |||| || | || | | | || |||||||| | Sbjct 3729 AATGAAAATGAAGTAACAACGATAATTCATCAAAATGGCTACAGGCTTTGGGGCAATAGA 3788 Query 32577 ACCACTTCCAGCGATCCGAAATGGGCGTTTCTGTGCGTTGTTCGCACGGCTGACATCATC 32636 || ||| | ||| |||||||||| ||||||| || | || || || | ||| Sbjct 3789 ACATGTTCAAATGATTCGAAATGGGCTTTTCTGTCAGTGAGAAGAACTGCAGATTTAATC 3848 Query 32637 AATGACAGCCTGTTGCGTGCACACCTGTGGGCCGTAGACCGTGGCATCACCAAACAATAC 32696 ||||| || || | || || || || ||||| || || || || |||||| || Sbjct 3849 AATGATAGTCTACTTCGAGCTCATCTATGGGCAGTTGATCGCAATATTACCAAAACTTAT 3908 Query 32697 GTCAATGACGTGATTGAAGGCGTGAACGCGTACCTGCGCAACCTGGTGAGC-CTGGGCGC 32755 | |||| |||||||| || ||||| | ||||| |||| | ||| | || || Sbjct 3909 ATAGATGATGTGATTGAGGGGGTGAATTCTTACCTT-GCAAGTTTAAAAGCACAAGGGGC 3967 Query 32756 AATTCTTGGCGGCACGTGTTGGGCTGACCCTGACTTAAATACTGCTGACCAAATCGCTGA 32815 ||| || |||| | |||| || || || | ||||| | | | || || Sbjct 3968 GATTATTAGCGGAAAATGTTATGCAACACCAGAACTCAATACACCGGCAAATATTGCAAG 4027 Query 32816 CGGTAAGGTATACTTTGATTTTGATTTCACGCCTGTTTATCCGGCTGAACACAT 32869 ||| || || | ||||||||||| |||| ||| ||||| || ||||| || Sbjct 4028 CGGGAAAGTGTCTTTTGATTTTGAGTTCATGCCACCATATCCAGCAGAACAGAT 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135364909466814