Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq22232 223 4e-53 >seq22232 Length=226448 Score = 223 bits (246), Expect = 4e-53 Identities = 457/677 (68%), Gaps = 22/677 (3%) Strand=Plus/Plus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTT 146900 ||| || || ||||||| |||| | | | ||| || |||||||||||||| || | Sbjct 53754 GAAGTCTTCGATGTCCTGCACCTGGCGCTTGATCACCAGTTTGGGGAAGGGTCGCGGCGT 53813 Query 146901 CCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAG 146960 | ||| || || | || || ||||| || || |||||||| | || || | Sbjct 53814 ACGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAGACGTGGGTATCGCCAAA 53873 Query 146961 GGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAG 147020 |||||||| ||||| || ||||| || || || || || || | ||||| ||||| || Sbjct 53874 CGTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCGATCATGTGAGTGAGAAG 53933 Query 147021 CGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAG 147080 | |||| ||| ||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 53934 GGCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAG 53993 Query 147081 CTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCACGG 147134 |||||| ||||| || ||| | || ||||| ||||| ||| ||||||||| Sbjct 53994 CTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACGTAGAACTGCGCTAGGCAGTGGCACGG 54053 Query 147135 CGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCT 147194 |||||||||||| || | ||| | || ||||| || || | | | ||||| Sbjct 54054 CGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGACATGATAATGCGCCTATC 54113 Query 147195 CTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCC 147254 | ||| ||| |||| || ||||| ||| | || |||||| | ||||| || Sbjct 54114 CGAGGGATTCTTCTTGATGGTGTCGATTACCTGACGCAACTGGTCGATGCCCTTTCCAGT 54173 Query 147255 GTAGTTTGTCC-CGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACA 147313 ||| | |||| ||||| | ||| || |||||||||| ||||||||| || |||| Sbjct 54174 ATAG-TCGTCCTCGCAGGTGCCATACTCTGCGCCAAAGTGCCGCCACTGGAAACCATACA 54232 Query 147314 CTGGCCCCAGGTCGCC----GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---AGAAAC 147366 | || ||||| ||||| | || || ||| | | || | ||| || ||| Sbjct 54233 CCGGGCCCAGATCGCCGACAGCGCGCTCCGTGTG-------CCCCAGATTGTCCAGGAAC 54285 Query 147367 TCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCC 147426 || || | || ||||||||| | |||| |||||| ||| ||| | |||| Sbjct 54286 TCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACTTTCTTGGCCTGCAGCAGCTTGGCGTCC 54345 Query 147427 GTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTG 147486 || ||| | |||||||||||||| || || || | ||||||| | |||| Sbjct 54346 GTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCACACCGCGAAAAAAGACGCGCTTG 54405 Query 147487 GTGGTCAGCAGGGGGAA 147503 |||||||| || || || Sbjct 54406 GTGGTCAGTAGAGGAAA 54422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583321567341600