Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq22136 199 6e-45 seq21402 120 4e-21 >seq22136 Length=515022 Score = 199 bits (220), Expect = 6e-45 Identities = 338/482 (70%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| |||||||| || ||||| | |||||||| ||||| | ||| | | ||| Sbjct 290456 AGGCTGAGGCCTCTTTCTGGACTGTGGAGGAGGTTGACCTGTCCAAGGACTTGACCGACT 290397 Query 1455856 GGGTGTCG-CTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 || ||| || | ||||| ||||| || |||||| |||||| || ||||| || ||| Sbjct 290396 GGCA-TCGTCTCAAGGACGATGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTT-CGC 290339 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| ||||||||| || |||||||| | | ||||| | | ||||| || | Sbjct 290338 CGCCTCCGATGGCATTGTTAATGAGAACCTCGTGGAGCGCTTCAGTCAGGAGGTGCAGAT 290279 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | ||||| || | || ||||| |||||||||||||| || ||| | ||||| || | Sbjct 290278 CACGGAGGCCCGCTGCTTCTACGGATTCCAGATCGCCATGGAGAACGTGCACTCGGAGAT 290219 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| | ||||||||||| ||| || ||| ||| | || ||| | || || Sbjct 290218 GTACAGCGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGAGACTATCTGTTCAA 290159 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||||| ||| |||| |||||| | ||||| |||||||| || |||||| Sbjct 290158 CGCCATCGAGACGATGCCAGCGGTGAAGCGCAAGGCGGACTGGGCCCTGTCCTGGATC-T 290100 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATC 1456213 | | | || | | | || | ||||| || ||| |||||||| ||| ||||||||| Sbjct 290099 CCTCCAAGTCCGCCA-ATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATC 290041 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||| ||||||||| | |||| || ||||| ||||| ||||| | ||||| || Sbjct 290040 TTCTTCAGCGGCAGTTTCGCCTCCATTTTCTGGCTAAAGAAACGCGGTTTGATGCCGGGC 289981 Query 1456274 CT 1456275 || Sbjct 289980 CT 289979 Score = 89.7 bits (98), Expect = 7e-12 Identities = 156/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| || || || | || ||| | ||||| ||| ||| | ||||| || Sbjct 289871 AGATCATCCGTGATGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTAA 289812 Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || || ||||||||| || ||| |||||| ||||||||||| || || || |||| Sbjct 289811 ACCTTATTGGCATGAACTGCGACC--TCATGTCGCAGTACATTGAGTTC-GTGGCGGACC 289755 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | |||| | || | ||| ||| ||| |||| || ||||||||| | Sbjct 289754 GTTTGCTGGTGGAATTGGGCGTTGGA-AAGATCTACAACACCAAGAACCCGTTCAACTTC 289696 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| ||||||| || || |||||||||||||| |||||| Sbjct 289695 ATGGAGATGATCTCCCTGGACGGCAAGACCAACTTCTTCGAG 289654 >seq21402 Length=104334 Score = 120 bits (132), Expect = 4e-21 Identities = 203/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 332924 GTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGG 332983 ||||||||||||||||| || || || || ||| | | | ||||| || |||||| Sbjct 17797 GTGTTGCAGGCCAGGGCGAATCGTGTGGTGTTGCTGTAGATCTCCATCGTGCGGCGGAGG 17738 Query 332984 GCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGC 333043 ||||||||||| || ||| | || ||| ||||| || ||||| | |||||| || | Sbjct 17737 GCCTGTTGGGCACCCTCCGTCATGCTGTCCGCCTCATCTAGGATCACGATCTTATGCCTG 17678 Query 333044 CCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCC 333103 ||| | || | ||| ||| | ||| ||||| | |||||||| || || Sbjct 17677 CCGCGTGGTAATGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCG 17618 Query 333104 ACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAG 333163 | || ||||| | || || || || ||||| || ||||| | | | | |||| | Sbjct 17617 ATTCCTCGCTCATTAGAGGCATTTAGCTCGAGAACAGCCTCTTTATAGCTCTCTCCCAGG 17558 Query 333164 AGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 || | | |||||||||| |||| | |||||||||||| ||| || |||||| Sbjct 17557 AGAATCCTCGCCAGGCACTGGATGGTGGTGGTCTTGCCCACGCCAGGAGGACCC 17504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175610265508678