Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 131 2e-25
seq22430 127 2e-24
seq5502 125 6e-24
seq22266 113 4e-20
seq20501 98.7 9e-16
>seq22190
Length=927835
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| || |||||||| |||| |
Sbjct 837296 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837237
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || | || |||||||| || || || || ||||| ||||||||||| | |||
Sbjct 837236 AAGGTGCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 837177
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||||| | | | || ||| | || |||
Sbjct 837176 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACC 837117
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| |||||||| || |||||
Sbjct 837116 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCAT 837070
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||||| || || |||||| || |||||||| |||| |
Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || |||| |||| |||||| || ||||| ||||| ||||||||||| | |||
Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| ||| || ||||| | | | || ||| | || |||
Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACC 837572
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | ||| || ||||| ||||||||
Sbjct 837571 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 118 bits (130), Expect = 1e-21
Identities = 163/227 (72%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | ||| |||||| || |||||||| |||| |
Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || |||| |||| |||||| || ||||| ||||| ||||||||||| | |||
Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| ||| || ||||| | | | || ||| | || |||
Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 837344
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || ||||| || || || || | ||| || ||||| ||||||||
Sbjct 837343 T-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
>seq22430
Length=315411
Score = 127 bits (140), Expect = 2e-24
Identities = 213/308 (69%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190
|||||||| | || ||| || ||| |||| || ||||| |||||| | | | || |
Sbjct 156960 TGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGCA 157019
Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250
|||||||| ||| ||||| | || ||| | | || || ||| | | |||
Sbjct 157020 TGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTATG 157079
Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310
| ||| |||||||||||||| || | || || ||||| |||||||| || || || |
Sbjct 157080 CGATCCTACTGAACGACAAGTATAGCCTCGATGGACGCGATCCCAACGGCTATGTGGGCT 157139
Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370
||||||||||||| |||||||||| || | || ||| || | |||| | ||| |
Sbjct 157140 GTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGGAA 157199
Query 44371 AAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAAACCTATATTA 44430
| || || ||||||||||| | || ||| | || |||||||| || ||| | | |
Sbjct 157200 AGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGTCAACGCCTTTGTCA 157259
Query 44431 ATCGTTAC 44438
||||||
Sbjct 157260 TGCGTTAC 157267
>seq5502
Length=68615
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | ||| ||||| || | || ||||||||| ||||||||||| | |
Sbjct 6732 CCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGAC 6791
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || |||| ||||| ||||| || ||||| || || |||||||| || | |||
Sbjct 6792 AACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGA 6851
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||||| | | | | ||||||| | || |||
Sbjct 6852 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACC 6911
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | || || ||||| || |||| || ||||| || || |||||
Sbjct 6912 TCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
Score = 118 bits (130), Expect = 1e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||| | |||||| | || || |||||||| || |||||
Sbjct 7224 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAG 7283
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| ||||||||||| | |||| || |||||| ||| ||||| ||| | | |
Sbjct 7284 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTTACATTC 7343
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||| ||| | |||||||||| || || || || || ||||| || ||||||
Sbjct 7344 TCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACA 7403
Query 35726 AATATCTGCATTCTG 35740
|| ||||||||| ||
Sbjct 7404 AAGATCTGCATTTTG 7418
>seq22266
Length=384576
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| ||| | || |||||| || |||||||| || | |
Sbjct 109157 CCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 109216
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||||||||| || || || |||| |||||||| || | |||
Sbjct 109217 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 109276
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||||| | | | | ||||| | ||||||
Sbjct 109277 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 109336
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || || | |||||||| || || |||||
Sbjct 109337 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
>seq20501
Length=31302
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||| || || || |||||| |||||||| || || |
Sbjct 11117 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11176
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||||||||| || || || |||| |||||||| || | ||||
Sbjct 11177 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11236
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | || |||||| ||||| || | | || | | ||||| || ||| |||
Sbjct 11237 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACC 11296
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||| | || || || || ||||||||
Sbjct 11297 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450665016760520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |