Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq22190 131 2e-25 seq22430 127 2e-24 seq5502 125 6e-24 seq22266 113 4e-20 seq20501 98.7 9e-16 >seq22190 Length=927835 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||| || |||||||| |||| | Sbjct 837296 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837237 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||||||| || || || || ||||| ||||||||||| | ||| Sbjct 837236 AAGGTGCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 837177 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | || ||| | || ||| Sbjct 837176 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACC 837117 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| |||||||| || ||||| Sbjct 837116 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCAT 837070 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| || || |||||| || |||||||| |||| | Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| |||||| || ||||| ||||| ||||||||||| | ||| Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||| || ||||| | | | || ||| | || ||| Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACC 837572 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 837571 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 118 bits (130), Expect = 1e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||| || |||||||| |||| | Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| |||||| || ||||| ||||| ||||||||||| | ||| Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||| || ||||| | | | || ||| | || ||| Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 837344 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| || || || || | ||| || ||||| |||||||| Sbjct 837343 T-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq22430 Length=315411 Score = 127 bits (140), Expect = 2e-24 Identities = 213/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||| | || ||| || ||| |||| || ||||| |||||| | | | || | Sbjct 156960 TGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGCA 157019 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||||||| ||| ||||| | || ||| | | || || ||| | | ||| Sbjct 157020 TGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTATG 157079 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310 | ||| |||||||||||||| || | || || ||||| |||||||| || || || | Sbjct 157080 CGATCCTACTGAACGACAAGTATAGCCTCGATGGACGCGATCCCAACGGCTATGTGGGCT 157139 Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370 ||||||||||||| |||||||||| || | || ||| || | |||| | ||| | Sbjct 157140 GTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGGAA 157199 Query 44371 AAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAAAACCTATATTA 44430 | || || ||||||||||| | || ||| | || |||||||| || ||| | | | Sbjct 157200 AGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGTCAACGCCTTTGTCA 157259 Query 44431 ATCGTTAC 44438 |||||| Sbjct 157260 TGCGTTAC 157267 >seq5502 Length=68615 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || ||||||||| ||||||||||| | | Sbjct 6732 CCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGAC 6791 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| ||||| ||||| || ||||| || || |||||||| || | ||| Sbjct 6792 AACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGA 6851 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | | ||||||| | || ||| Sbjct 6852 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACC 6911 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || ||||| || |||| || ||||| || || ||||| Sbjct 6912 TCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | |||||| | || || |||||||| || ||||| Sbjct 7224 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAG 7283 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | |||| || |||||| ||| ||||| ||| | | | Sbjct 7284 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTTACATTC 7343 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| ||| | |||||||||| || || || || || ||||| || |||||| Sbjct 7344 TCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACA 7403 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 7404 AAGATCTGCATTTTG 7418 >seq22266 Length=384576 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | || |||||| || |||||||| || | | Sbjct 109157 CCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 109216 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 109217 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 109276 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||||| | |||||| Sbjct 109277 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 109336 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | |||||||| || || ||||| Sbjct 109337 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383 >seq20501 Length=31302 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || || || |||||| |||||||| || || | Sbjct 11117 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11176 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || |||| |||||||| || | |||| Sbjct 11177 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11236 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| ||||| || | | || | | ||||| || ||| ||| Sbjct 11237 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACC 11296 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 11297 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450665016760520