Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 131 2e-25
seq20501 129 6e-25
seq22266 105 7e-18
seq22190 104 2e-17
seq22136 104 2e-17
seq22228 87.8 2e-12
>seq5502
Length=68615
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | |||||| | || | ||| || ||||||||||| || |||||||||||| |
Sbjct 6504 CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 6563
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || || | ||| || || || ||||| | |||||||||||| || ||
Sbjct 6564 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 6623
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || || || || | ||||| || | |||||
Sbjct 6624 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACT 6683
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||||| |||||||| ||||| || || || ||||| ||||||||
Sbjct 6684 TCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || ||||||||||| || |||||||||||| || ||| | || || |||||
Sbjct 6071 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTG 6130
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| ||||| |||| |||||||||||| || || || || || || || || || ||
Sbjct 6131 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 6190
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || || | |||||||| | ||||| || || ||||||||||| || ||
Sbjct 6191 GGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTGCCAGT 6250
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| ||||||||
Sbjct 6251 CAGGGTCTTCACGAAGATTTGCAT 6274
Score = 118 bits (130), Expect = 1e-21
Identities = 151/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || ||||||||||| || |||||||||||| || ||| | || || |||||
Sbjct 7211 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTG 7270
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| ||||| |||| ||||||||| || || || ||||| || || || ||||| ||
Sbjct 7271 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTT 7330
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || || | || ||||| | ||||| || | ||||||||| || || ||
Sbjct 7331 GGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGT 7390
Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || || || || |||||||||
Sbjct 7391 CAATGTCTTCACAAAGATCTGCATTTTG 7418
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|| ||||| || | ||| || || || |||||||| |||||||| || | ||||| | |
Sbjct 6741 AGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACG-TACG 6799
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
||| || || || ||||| ||||| || || ||||||||||| || || || || ||
Sbjct 6800 TCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTC 6859
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || | |||||||| | || || || || ||
Sbjct 6860 CTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGT 6919
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||||||| || || | || || ||||| ||||||||
Sbjct 6920 AATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
Score = 102 bits (112), Expect = 8e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || ||||||||||| || ||||||||||| || |||| | || || | |||
Sbjct 6983 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAACTG 7042
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || || ||||| | |||||||||||| || || || || || || || ||||| ||
Sbjct 7043 CTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTT 7102
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|| || || | ||||| || | ||| || || | || ||||| || |||||
Sbjct 7103 AGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTTCCGGT 7162
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| ||||||||
Sbjct 7163 CAAGGTCTTTACGAAGATTTGCAT 7186
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | ||| || | ||| | ||| | ||||| ||||| || ||||| || |||
Sbjct 5818 TTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGG 5877
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| ||| | || || | ||| ||||| || || ||||||||||||||||| || |
Sbjct 5878 ACAGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 5937
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || || || || || || || || | || || || | ||| |
Sbjct 5938 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGA 5997
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
| || | || |||||||| ||||| || || || ||||| ||||||||
Sbjct 5998 CTTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | |||||| | || | ||| || ||||||||||| || ||||||||||| |
Sbjct 6276 CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 6335
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || || | || || || || ||||| | ||| |||||||| || ||
Sbjct 6336 AGGGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGG 6395
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || || || || | |||||||| | || ||
Sbjct 6396 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACC 6455
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || |||||||| || || || | || || ||||| || |||||
Sbjct 6456 TCCAGCGTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
>seq20501
Length=31302
Score = 129 bits (142), Expect = 6e-25
Identities = 164/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| | ||| | ||||| ||||| |||||||| ||||| | ||| |
Sbjct 11126 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGG 11185
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||||||| || || || ||||||
Sbjct 11186 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 11245
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || |||||| || | ||||| |||| ||| || || |||||
Sbjct 11246 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTG 11305
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721
||||| || || || | || |||||||| || ||||| |||| ||
Sbjct 11306 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTATT 11351
>seq22266
Length=384576
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| || || || || || ||||| || ||||||||||| | |||| |
Sbjct 109166 AGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 109225
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| |||||||||||| || || ||||| ||
Sbjct 109226 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 109285
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || || | ||||| || | ||||| || | ||
Sbjct 109286 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 109345
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| | ||||| ||||||||||||||
Sbjct 109346 ATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
>seq22190
Length=927835
Score = 104 bits (114), Expect = 2e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || || || ||||| || |||||||||||| | |||| |
Sbjct 837287 AGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 837228
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || |||||||| || || || ||||| |||||||| || || || || || ||
Sbjct 837227 CCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCC 837168
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || || | || ||||| | || || || | |||
Sbjct 837167 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTG 837108
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || ||||| ||||| || || ||||||||||| |||
Sbjct 837107 ATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCATGTTG 837066
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576
||||| ||||| || |||||||||||| | |||| | ||| || | ||| |||||
Sbjct 837721 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCCAACTGCTTGCCA 837662
Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636
||||| |||||||||||||| || || || |||||||| || || || ||||| ||
Sbjct 837661 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTC 837602
Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696
|| || | || ||||| | || || || || || ||||| || || || | |||
Sbjct 837601 ACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 837542
Query 134697 TTAACGAAAATTTGCAT 134713
|| || || || |||||
Sbjct 837541 TTGACAAAGATCTGCAT 837525
Score = 102 bits (112), Expect = 8e-17
Identities = 154/218 (71%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || || || ||||| || |||||||||||| | |||| |
Sbjct 837514 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 837455
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || | ||| ||||| ||||| |||||||||||||| || || || ||||||||
Sbjct 837454 CCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCC 837395
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || ||||| || || || | || ||||| | || || || || ||
Sbjct 837394 TTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTG 837336
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || | ||| || || || || |||||
Sbjct 837335 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
>seq22136
Length=515022
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 21423 CTTGTATTCGCCGACCCGTCTT-TCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTT 21481
|| ||| ||||| ||| |||| || ||||| || || || || || || | || | |
Sbjct 289633 CTGGTACTCGCCCACCT-TCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCT 289691
Query 21482 TCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCACA 21541
||| || || || || || ||| || | | || | || ||||||||| ||
Sbjct 289692 CCATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCA 289751
Query 21542 AACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGAT 21601
|||| ||||||||||| |||||||| || ||||| |||||| |||||||| | || |
Sbjct 289752 AACGGTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGT 289811
Query 21602 CGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650
|| || || || ||||||| ||||||| ||| || |||||||| ||
Sbjct 289812 TTACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATC 289860
>seq22228
Length=358660
Score = 87.8 bits (96), Expect = 2e-12
Identities = 223/336 (66%), Gaps = 5/336 (1%)
Strand=Plus/Minus
Query 46255 CCAATCACGCCGCAACCTAAACGACCGCCAGAATTGCCTGTGGTTTGGCTGAGAACAGAA 46314
||||| |||||||| || | ||| |||||| ||||| |||| | ||| || |
Sbjct 288342 CCAATGACGCCGCATCCAATGCGAGCGCCAGCGTTGCCCGTGGACTTGCTCAGCTCGTGG 288283
Query 46315 TCGCCCAAACCCAAATCGTCGCGTTCGGCGTGCACAACTAGACTGCGTCCCAGCACGCTG 46374
||||| || | ||| ||| |||||||| || || | ||||||| | | ||||
Sbjct 288282 CCGCCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGTCCGATGATGCTG 288223
Query 46375 TTGTCGCCGTATAAAGTCATTACGTTGTCAGTGATAGACACCTGTGTTAAGCTGTTGTAG 46434
| | ||||| | | || || ||| ||||| | |||| || || || |
Sbjct 288222 TCGGCGCCGAAGAGCGTGATCCTCGAGTCGGTGATGGTGACCTTCGTGGGGCAGTCG--- 288166
Query 46435 CCGCGCGATTCCACGTTGCCTAAATCACCCACGTGACGCTCTAGGGCGTTGGGCGCGCCG 46494
||| | || | |||||| | ||| |||| ||| || || | || ||| ||||||
Sbjct 288165 CCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGCGCCG 288106
Query 46495 TGTTTTTTGTGCGTA-GGATTGAAATGTTCTCCCGCCGACGTGCATCCGTTGCTCGAATC 46553
|| | ||| |||| |||||||| || || | ||| |||| |||||| | ||
Sbjct 288105 TGCTCCTTGC-CGTAAGGATTGAAGTGCGGCCCGGATGACATGCAGCCGTTGGTGTTGTC 288047
Query 46554 TCCGAATTCGTGCACGTGAAATCCATGCAAACCTTT 46589
||||| ||||||||||| ||||| |||| ||| ||
Sbjct 288046 ACCGAACTCGTGCACGTGGAATCCGTGCAGACCCTT 288011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505254241423880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |