Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5502 131 2e-25 seq20501 129 6e-25 seq22266 105 7e-18 seq22190 104 2e-17 seq22136 104 2e-17 seq22228 87.8 2e-12 >seq5502 Length=68615 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | || | ||| || ||||||||||| || |||||||||||| | Sbjct 6504 CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 6563 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | ||| || || || ||||| | |||||||||||| || || Sbjct 6564 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 6623 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | ||||| || | ||||| Sbjct 6624 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACT 6683 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| |||||||| ||||| || || || ||||| |||||||| Sbjct 6684 TCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||||||||| || |||||||||||| || ||| | || || ||||| Sbjct 6071 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTG 6130 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| |||| |||||||||||| || || || || || || || || || || Sbjct 6131 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 6190 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | |||||||| | ||||| || || ||||||||||| || || Sbjct 6191 GGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTGCCAGT 6250 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 6251 CAGGGTCTTCACGAAGATTTGCAT 6274 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||||||||| || |||||||||||| || ||| | || || ||||| Sbjct 7211 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTG 7270 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| |||| ||||||||| || || || ||||| || || || ||||| || Sbjct 7271 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTT 7330 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || ||||| | ||||| || | ||||||||| || || || Sbjct 7331 GGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGT 7390 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || ||||||||| Sbjct 7391 CAATGTCTTCACAAAGATCTGCATTTTG 7418 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || ||||| || | ||| || || || |||||||| |||||||| || | ||||| | | Sbjct 6741 AGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACG-TACG 6799 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || || || ||||| ||||| || || ||||||||||| || || || || || Sbjct 6800 TCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTC 6859 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | |||||||| | || || || || || Sbjct 6860 CTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGT 6919 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||| || || | || || ||||| |||||||| Sbjct 6920 AATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||||||||| || ||||||||||| || |||| | || || | ||| Sbjct 6983 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAACTG 7042 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || ||||| | |||||||||||| || || || || || || || ||||| || Sbjct 7043 CTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTT 7102 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | ||||| || | ||| || || | || ||||| || ||||| Sbjct 7103 AGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTTCCGGT 7162 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| Sbjct 7163 CAAGGTCTTTACGAAGATTTGCAT 7186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | ||| | ||| | ||||| ||||| || ||||| || ||| Sbjct 5818 TTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGG 5877 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || | ||| ||||| || || ||||||||||||||||| || | Sbjct 5878 ACAGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 5937 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || || || || | || || || | ||| | Sbjct 5938 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGA 5997 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || |||||||| ||||| || || || ||||| |||||||| Sbjct 5998 CTTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | || | ||| || ||||||||||| || ||||||||||| | Sbjct 6276 CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 6335 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | || || || || ||||| | ||| |||||||| || || Sbjct 6336 AGGGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGG 6395 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | |||||||| | || || Sbjct 6396 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACC 6455 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || | || || ||||| || ||||| Sbjct 6456 TCCAGCGTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 >seq20501 Length=31302 Score = 129 bits (142), Expect = 6e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| | ||||| ||||| |||||||| ||||| | ||| | Sbjct 11126 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGG 11185 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || |||||| Sbjct 11186 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 11245 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | ||||| |||| ||| || || ||||| Sbjct 11246 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTG 11305 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 ||||| || || || | || |||||||| || ||||| |||| || Sbjct 11306 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTATT 11351 >seq22266 Length=384576 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || ||||| || ||||||||||| | |||| | Sbjct 109166 AGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 109225 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || ||||| || Sbjct 109226 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 109285 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| || | ||||| || | || Sbjct 109286 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 109345 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||||| |||||||||||||| Sbjct 109346 ATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383 >seq22190 Length=927835 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | |||| | Sbjct 837287 AGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 837228 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || || || ||||| |||||||| || || || || || || Sbjct 837227 CCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCC 837168 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | || ||||| | || || || | ||| Sbjct 837167 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTG 837108 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| ||||| || || ||||||||||| ||| Sbjct 837107 ATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCATGTTG 837066 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 ||||| ||||| || |||||||||||| | |||| | ||| || | ||| ||||| Sbjct 837721 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCCAACTGCTTGCCA 837662 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| |||||||||||||| || || || |||||||| || || || ||||| || Sbjct 837661 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTC 837602 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | || ||||| | || || || || || ||||| || || || | ||| Sbjct 837601 ACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 837542 Query 134697 TTAACGAAAATTTGCAT 134713 || || || || ||||| Sbjct 837541 TTGACAAAGATCTGCAT 837525 Score = 102 bits (112), Expect = 8e-17 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | |||| | Sbjct 837514 AGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 837455 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 837454 CCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCC 837395 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| || || || | || ||||| | || || || || || Sbjct 837394 TTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTG 837336 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||| || || || || ||||| Sbjct 837335 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq22136 Length=515022 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 21423 CTTGTATTCGCCGACCCGTCTT-TCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTT 21481 || ||| ||||| ||| |||| || ||||| || || || || || || | || | | Sbjct 289633 CTGGTACTCGCCCACCT-TCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCT 289691 Query 21482 TCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCACA 21541 ||| || || || || || ||| || | | || | || ||||||||| || Sbjct 289692 CCATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCA 289751 Query 21542 AACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGAT 21601 |||| ||||||||||| |||||||| || ||||| |||||| |||||||| | || | Sbjct 289752 AACGGTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGT 289811 Query 21602 CGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 || || || || ||||||| ||||||| ||| || |||||||| || Sbjct 289812 TTACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATC 289860 >seq22228 Length=358660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 223/336 (66%), Gaps = 5/336 (1%) Strand=Plus/Minus Query 46255 CCAATCACGCCGCAACCTAAACGACCGCCAGAATTGCCTGTGGTTTGGCTGAGAACAGAA 46314 ||||| |||||||| || | ||| |||||| ||||| |||| | ||| || | Sbjct 288342 CCAATGACGCCGCATCCAATGCGAGCGCCAGCGTTGCCCGTGGACTTGCTCAGCTCGTGG 288283 Query 46315 TCGCCCAAACCCAAATCGTCGCGTTCGGCGTGCACAACTAGACTGCGTCCCAGCACGCTG 46374 ||||| || | ||| ||| |||||||| || || | ||||||| | | |||| Sbjct 288282 CCGCCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGTCCGATGATGCTG 288223 Query 46375 TTGTCGCCGTATAAAGTCATTACGTTGTCAGTGATAGACACCTGTGTTAAGCTGTTGTAG 46434 | | ||||| | | || || ||| ||||| | |||| || || || | Sbjct 288222 TCGGCGCCGAAGAGCGTGATCCTCGAGTCGGTGATGGTGACCTTCGTGGGGCAGTCG--- 288166 Query 46435 CCGCGCGATTCCACGTTGCCTAAATCACCCACGTGACGCTCTAGGGCGTTGGGCGCGCCG 46494 ||| | || | |||||| | ||| |||| ||| || || | || ||| |||||| Sbjct 288165 CCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGCGCCG 288106 Query 46495 TGTTTTTTGTGCGTA-GGATTGAAATGTTCTCCCGCCGACGTGCATCCGTTGCTCGAATC 46553 || | ||| |||| |||||||| || || | ||| |||| |||||| | || Sbjct 288105 TGCTCCTTGC-CGTAAGGATTGAAGTGCGGCCCGGATGACATGCAGCCGTTGGTGTTGTC 288047 Query 46554 TCCGAATTCGTGCACGTGAAATCCATGCAAACCTTT 46589 ||||| ||||||||||| ||||| |||| ||| || Sbjct 288046 ACCGAACTCGTGCACGTGGAATCCGTGCAGACCCTT 288011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505254241423880