Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19514 105 5e-18 seq21537 100 2e-16 >seq19514 Length=26595 Score = 105 bits (116), Expect = 5e-18 Identities = 339/524 (65%), Gaps = 23/524 (4%) Strand=Plus/Plus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| |||||||||||||| | ||| | | |||||||| || | || || | || Sbjct 17943 CCAAAGATTGTAAATGGTCCACAGATCCTGGACAAATATGTGGGCGAGTCAGAGGCCAAC 18002 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||||| || || || || || || || || | || || || || | || ||| Sbjct 18003 ATCCGACGATTATTCGCCGAAGCCGAGGAGGAGGAGAAGCGCTTGGGACCGAACAGTGGG 18062 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 ||||||| || || | || || | || || || || ||| ||||||| ||| Sbjct 18063 CTGCACATCATTATCTTCGACGAGATCGATGCCATTTGCAAGGCTCGAGGTTCGGTGGCC 18122 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||| || || ||||| || ||||||||||| ||| | || | ||||| || Sbjct 18123 GGCAACAGTGGTGTCCACGACACGGTCGTCAATCAACTGCTGGCCAAGATTGACGGCGTG 18182 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| ||||| | || || || ||||| || || | ||| | || || Sbjct 18183 GAACAGTTGAACAATATCCTGGTGATAGGAATGACCAACAGGCGGGACATGATCGATGAG 18242 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | | || || || ||||||||| | | || || || | ||||||| |||| Sbjct 18243 GCCCTGCTGCGTCCTGGCCGGTTGGAAGTTCAAATGGAGATCAGCTTACCCAATGAGCAG 18302 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCG--------ACAAAATAACC 19834 ||||| || | || | ||||| || ||| | ||||| |||| ||| || Sbjct 18303 GGACGCGTCCAGATCCTCAACATCCACACAAAACGGATGCGGGACTTCAACAAGATAGCC 18362 Query 19835 TTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCG 19894 | ||||| ||| | || || || || || || |||| || || | Sbjct 18363 AGT--------GATGTGGATAACAATGAGATAGCGGCCAGGACAAAGAACTTCAGTGGTG 18414 Query 19895 CAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 |||| || ||||||||||| || || || ||||||| || ||| Sbjct 18415 CAGAGCTGGAGGGATTAGTTAGAGCGGCTCAATCAACGGCCATG 18458 >seq21537 Length=1095913 Score = 100 bits (110), Expect = 2e-16 Identities = 338/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || ||||| || || || | || | | || ||||| || ||||||| | ||| Sbjct 941310 CCGAAGATTGTTAACGGGCCGCAGATTCTGGACAAGTATGTGGGCGAATCGGAGGCCAAT 941369 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || || || |||| || || || || || || | ||||| | || | ||| || Sbjct 941370 GTGCGCCGCCTGTTCGCCGAGGCAGAGGAGGAGGAGAAACGCCTGGGACCCAACAGCGGG 941429 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 |||| || ||||| | || || | || || || || ||||| | || || ||| Sbjct 941430 CTGCATATCATAATCTTCGACGAGATCGATGCCATTTGCAAGCAGCGTGGCTCGGTGGCC 941489 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| ||| || || ||||| |||||||||||||| ||| | ||| | || ||||| Sbjct 941490 GGTAATAGTGGTGTCCACGACACCGTTGTCAATCAACTGCTGACCAAAATCGATGGTGTG 941549 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| || || | || || |||||||| ||| | ||| | || || Sbjct 941550 GATCAGCTGAACAACATCCTGGTGATCGGCATGACCAATCGCAGGGACATGATCGATGAG 941609 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | ||||||||||| |||| | | || || || | | | ||| | ||| Sbjct 941610 GCACTGCTGCGACCCGGTCGTCTGGAGGTCCAAATGGAGATCAGCCTGCCCAACGAACAA 941669 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 || || || | || | ||||| ||||| ||| | ||||| | ||| | | Sbjct 941670 GGTCGCGTTCAGATCCTGAACATTCATAC--CAAGCGTATGCGTGATTTCAACAAAATCA 941727 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | |||||||| || | | || || ||||| || || || || | || || || || Sbjct 941728 ACGACGATGTGGA-CAACAAGGAGATTGCCACGCTGACAAAGAATTTCAGTGGTGCCGAG 941786 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 || || ||||| ||| | |||||||| || | ||| ||| Sbjct 941787 CTCGAAGGATTGGTGCGTGCCGCCCAGTCGAGTGCCATG 941825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397345464878095