Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq22136 111 5e-19 >seq22136 Length=515022 Score = 111 bits (122), Expect = 5e-19 Identities = 354/536 (66%), Gaps = 30/536 (6%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || ||||| |||||||| |||| || |||||||||||| |||| ||| | || || Sbjct 290442 TTCTGGACTGTGGAGGAGGTTGACCTGTCCAAGGACTTGACCGACTGGCAT---CGTCT- 290387 Query 443397 TCTAG--CCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACG 443454 | || | |||| || | ||| || | | |||||||||| || | ||| | Sbjct 290386 -CAAGGACGATGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATG 290328 Query 443455 GTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCC 443514 | || || |||||| || ||| ||| ||| | ||| | ||| ||||||| Sbjct 290327 GCATTGTTAATGAGAACCTCGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCCC 290268 Query 443515 GCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGT 443574 ||| |||||||| ||||| ||| ||||||||| | ||| | ||| | ||||| | Sbjct 290267 GCTGCTTCTACGGATTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGCGTGC 290208 Query 443575 TGATCAAGACACTAAT-TCCGAACGAAGACGAAC-AGCG-GTCCATCTTCTCATCGT--T 443629 ||||| |||||| | |||| | | || || |||| | | |||| ||| || | Sbjct 290207 TGATC--GACACTTACATCCG---GGATCCGCACCAGCGAGACTATCTGTTCAACGCCAT 290153 Query 443630 CATGACCACGCCAGGCATCACTGAA----AAGACTCGCTGGGCAAAACAGTGGCTCGAAC 443685 | ||| | ||||| | |||| ||| | |||||| ||| || | Sbjct 290152 CGAGACGATGCCAG----CGGTGAAGCGCAAGGCGGACTGGGCCCTGTCCTGGATCT--C 290099 Query 443686 GAGAAAATCT--CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743 || || || |||| ||||| | |||| ||||| | || || || | || Sbjct 290098 CTCCAAGTCCGCCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTT 290039 Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803 || |||||||| ||| |||||||| |||||| | || || || || | |||| || | Sbjct 290038 CTTCAGCGGCAG-TTTCGCCTCCATTTTCTGGCTAAAGAAACGCGGTTTGATGCCGGGCC 289980 Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCC 443859 ||||||| |||||||||||| ||||||||||| ||||| || ||||||||| Sbjct 289979 TGACCTTCTCCAACGAACTGATCTCCCGGGACGAGGGATTGCACTGTGACTTCGCC 289924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587871620685455