Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 188 8e-43
seq5502 188 8e-43
seq20501 167 3e-36
seq22266 158 1e-33
seq20124 138 1e-27
>seq22190
Length=927835
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || || |||||||| ||| |
Sbjct 837525 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 837584
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct 837585 GATACCATTGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 837644
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || |||||||| ||||| | ||||| | || ||| | | ||||| ||
Sbjct 837645 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACAAC 837704
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||| | ||| | ||| ||||||| || |||||
Sbjct 837705 ATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGTGG 837751
Score = 163 bits (180), Expect = 3e-35
Identities = 173/227 (76%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || || |||||||| ||| |
Sbjct 837298 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCAC-CTTGAGGTCGAGCCCTCC 837356
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct 837357 GATACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 837416
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || |||||||| ||||| | ||||| | || ||| | | ||||| ||
Sbjct 837417 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACAAC 837476
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || | || | ||||| || |||||
Sbjct 837477 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 837523
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| ||||| | ||||||||||| || ||| | ||||||||| |
Sbjct 837070 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 837129
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||||| || || |||||||||||||||||||| |||||||||
Sbjct 837130 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 837189
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || || || || || |||| || ||| | | ||||| ||
Sbjct 837190 CAGCGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCACCTTGTCCGACTACAAC 837249
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || | || | || || || |||||
Sbjct 837250 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGCCTGCGTGGTGG 837296
>seq5502
Length=68615
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | ||||| || || || ||||| || || ||| || |
Sbjct 6730 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCT 6671
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| |||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 6670 GACACCATTGAAAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 6611
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||| ||||| | || |||| || ||||| | ||||| ||
Sbjct 6610 CAGCGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCCGACTACAAC 6551
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| ||||| | || | || || ||||||||
Sbjct 6550 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGACTCCGCGGTGG 6504
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | ||||| ||||| || || | || || || || |
Sbjct 7186 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAGACCATCACCTTGGAAGTCGAACCATCT 7127
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| |||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 7126 GACACCATTGAAAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 7067
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||| ||||| | || |||| || ||||| | ||||| ||
Sbjct 7066 CAGCGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCGGACTACAAC 7007
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| ||||| | || | ||||||||||||||
Sbjct 7006 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGTCTTCGCGGTGG 6960
Score = 187 bits (206), Expect = 3e-42
Identities = 178/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| | || |||||||| |||||| | ||||| ||| |
Sbjct 7415 AATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 7356
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | ||| | ||||| || |||||||| |||||||| ||||| ||||||||
Sbjct 7355 CGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 7296
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || ||||| || ||||| || || |||| || ||||| | ||||| ||
Sbjct 7295 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAA 7236
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| ||||| | ||| | ||||||||||||||
Sbjct 7235 CATCCAGAAGGAATCCACCCTTCACTTGGTCCTCCGTCTTCGCGGTGG 7188
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || ||||| || ||||| |||||||| ||| ||
Sbjct 6274 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTGGAGCCATCC 6215
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| ||||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 6214 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6155
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || ||||| || || |||| || ||||| | ||||| ||
Sbjct 6154 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAAC 6095
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| ||||| | || | ||||||||||||||
Sbjct 6094 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGTCTTCGCGGTGG 6048
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| ||||| || ||||||||| |
Sbjct 6502 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATTACGCTGGAGGTTGAGCCCTCC 6443
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| ||||||| || || |||||||||||||| || || ||||| |||
Sbjct 6442 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCAG 6383
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| ||||| ||||| |||||| | || |||| || ||||| | ||||| ||
Sbjct 6382 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAAC 6323
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| ||||| | || | || || ||||||||
Sbjct 6322 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGACTCCGCGGTGG 6276
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || ||||| || ||||| |||||||| ||| ||
Sbjct 6958 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATCC 6899
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| ||||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 6898 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6839
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| |||| ||||| || |||||||| ||||| | ||||| | | || || ||
Sbjct 6838 CAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGACGTACGTTGTCTGATTACAAC 6779
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || ||||| | || ||||||||||| |||||
Sbjct 6778 ATCCAAAAGGAGTCGACCCTTCACTTGGTATTGCGTCTTCGTGGTGG 6732
Score = 136 bits (150), Expect = 5e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | ||||| || || || || | || || || | |
Sbjct 6046 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCT 5987
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||||| || || |||||||||||||||||||| ||||| |||
Sbjct 5986 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 5927
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || ||||| | || |||| || || || | || |||||
Sbjct 5926 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGACGCACTCTGTCCGATTATAAC 5867
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| ||||| |||||| | || | || | ||||| ||||| |||
Sbjct 5866 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTCCGCGGAGGA 5819
>seq20501
Length=31302
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || ||||||||||| || |
Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | || || || ||||||||||| || |||||||||||||| |||
Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || || |||| |||||||| | ||||||||
Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| |||||| | || | || ||||||| || |||||
Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 11117
>seq22266
Length=384576
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || || ||||||||||| || || | ||||| ||| |
Sbjct 109383 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 109324
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| ||||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 109323 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 109264
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| || ||||||| || ||||| | ||||| ||
Sbjct 109263 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAAC 109204
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||||| || | || || || |||||
Sbjct 109203 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTCCGCCTGCGTGGTGG 109157
>seq20124
Length=133112
Score = 138 bits (152), Expect = 1e-27
Identities = 204/289 (71%), Gaps = 0/289 (0%)
Strand=Plus/Minus
Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020
|||| || ||||| ||| ||| || || ||||| ||||||||||| || | |
Sbjct 44098 AGCGCTCTATTCCCAGTCTGGTGGATGGACTTAAGCCGGGTCAGCGCAAGGTAATGTTCA 44039
Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080
||||| |||||| |||| | | || ||||||| || ||||| || || | ||||
Sbjct 44038 CCTGCTTCAAGAGGAACGACAAGCGCGAGGTGAAGGTCGCCCAGCTATCCGGATCGGTGG 43979
Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140
| ||| | ||||| ||||||||||||| ||| | ||| |||||||| || || |
Sbjct 43978 CCGAGATGTCCGCCTACCACCACGGCGAGGTCTCGTTGCAGATGACCATTGTGAATCTCG 43919
Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200
| ||||||||||| || ||||| ||| | || | || || ||| || ||||| || |
Sbjct 43918 CCCAGAACTTTGTGGGCGCAAACAACATCAATCTGCTGGAACCACGCGGTCAGTTCGGTA 43859
Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249
| || | | |||||||| ||| || ||| | |||||||| |||||
Sbjct 43858 CTCGTTTGACGGGTGGCAAAGATAGCGCCAGCGCTCGTTACATTTTCAC 43810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570147726087280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |