Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq22190 188 8e-43 seq5502 188 8e-43 seq20501 167 3e-36 seq22266 158 1e-33 seq20124 138 1e-27 >seq22190 Length=927835 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||| ||| | Sbjct 837525 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 837584 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 837585 GATACCATTGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 837644 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||| | || ||| | | ||||| || Sbjct 837645 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACAAC 837704 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| | ||| | ||| ||||||| || ||||| Sbjct 837705 ATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGTGG 837751 Score = 163 bits (180), Expect = 3e-35 Identities = 173/227 (76%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||| ||| | Sbjct 837298 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCAC-CTTGAGGTCGAGCCCTCC 837356 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||||||||| ||||||||||| || ||||| ||||||||| Sbjct 837357 GATACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 837416 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||| | || ||| | | ||||| || Sbjct 837417 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACAAC 837476 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 837477 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 837523 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | ||||||||||| || ||| | ||||||||| | Sbjct 837070 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 837129 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || |||||||||||||||||||| ||||||||| Sbjct 837130 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 837189 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || || || || || |||| || ||| | | ||||| || Sbjct 837190 CAGCGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCACCTTGTCCGACTACAAC 837249 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | || || || ||||| Sbjct 837250 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGCCTGCGTGGTGG 837296 >seq5502 Length=68615 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| || || || ||||| || || ||| || | Sbjct 6730 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCT 6671 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| |||||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 6670 GACACCATTGAAAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 6611 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| | || |||| || ||||| | ||||| || Sbjct 6610 CAGCGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCCGACTACAAC 6551 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| | || | || || |||||||| Sbjct 6550 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGACTCCGCGGTGG 6504 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| ||||| || || | || || || || | Sbjct 7186 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAGACCATCACCTTGGAAGTCGAACCATCT 7127 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| |||||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 7126 GACACCATTGAAAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 7067 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| | || |||| || ||||| | ||||| || Sbjct 7066 CAGCGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCGGACTACAAC 7007 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| | || | |||||||||||||| Sbjct 7006 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGTCTTCGCGGTGG 6960 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || |||||||| |||||| | ||||| ||| | Sbjct 7415 AATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 7356 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | ||||| || |||||||| |||||||| ||||| |||||||| Sbjct 7355 CGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 7296 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 7295 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAA 7236 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| | ||| | |||||||||||||| Sbjct 7235 CATCCAGAAGGAATCCACCCTTCACTTGGTCCTCCGTCTTCGCGGTGG 7188 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || ||||| || ||||| |||||||| ||| || Sbjct 6274 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTGGAGCCATCC 6215 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 6214 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6155 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 6154 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAAC 6095 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| | || | |||||||||||||| Sbjct 6094 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGTCTTCGCGGTGG 6048 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| ||||| || ||||||||| | Sbjct 6502 ATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATTACGCTGGAGGTTGAGCCCTCC 6443 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || || |||||||||||||| || || ||||| ||| Sbjct 6442 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCAG 6383 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| |||||| | || |||| || ||||| | ||||| || Sbjct 6382 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAAC 6323 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| ||||| | || | || || |||||||| Sbjct 6322 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGACTCCGCGGTGG 6276 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || ||||| || ||||| |||||||| ||| || Sbjct 6958 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATCC 6899 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 6898 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6839 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||| ||||| || |||||||| ||||| | ||||| | | || || || Sbjct 6838 CAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGACGTACGTTGTCTGATTACAAC 6779 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||| | || ||||||||||| ||||| Sbjct 6778 ATCCAAAAGGAGTCGACCCTTCACTTGGTATTGCGTCTTCGTGGTGG 6732 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| || || || || | || || || | | Sbjct 6046 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCT 5987 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || |||||||||||||||||||| ||||| ||| Sbjct 5986 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 5927 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| | || |||| || || || | || ||||| Sbjct 5926 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGACGCACTCTGTCCGATTATAAC 5867 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| |||||| | || | || | ||||| ||||| ||| Sbjct 5866 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTCCGCGGAGGA 5819 >seq20501 Length=31302 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||||||||| || | Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || ||||||||||| || |||||||||||||| ||| Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| |||||||| | |||||||| Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||| | || | || ||||||| || ||||| Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 11117 >seq22266 Length=384576 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || ||||||||||| || || | ||||| ||| | Sbjct 109383 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 109324 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 109323 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 109264 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 109263 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAAC 109204 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || | || || || ||||| Sbjct 109203 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTCCGCCTGCGTGGTGG 109157 >seq20124 Length=133112 Score = 138 bits (152), Expect = 1e-27 Identities = 204/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| || ||||| ||| ||| || || ||||| ||||||||||| || | | Sbjct 44098 AGCGCTCTATTCCCAGTCTGGTGGATGGACTTAAGCCGGGTCAGCGCAAGGTAATGTTCA 44039 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| |||||| |||| | | || ||||||| || ||||| || || | |||| Sbjct 44038 CCTGCTTCAAGAGGAACGACAAGCGCGAGGTGAAGGTCGCCCAGCTATCCGGATCGGTGG 43979 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||| | ||||| ||||||||||||| ||| | ||| |||||||| || || | Sbjct 43978 CCGAGATGTCCGCCTACCACCACGGCGAGGTCTCGTTGCAGATGACCATTGTGAATCTCG 43919 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||||||||||| || ||||| ||| | || | || || ||| || ||||| || | Sbjct 43918 CCCAGAACTTTGTGGGCGCAAACAACATCAATCTGCTGGAACCACGCGGTCAGTTCGGTA 43859 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | || | | |||||||| ||| || ||| | |||||||| ||||| Sbjct 43858 CTCGTTTGACGGGTGGCAAAGATAGCGCCAGCGCTCGTTACATTTTCAC 43810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570147726087280