Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq22232 165 7e-36 seq22465 102 7e-17 >seq22232 Length=226448 Score = 165 bits (182), Expect = 7e-36 Identities = 323/470 (69%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 || ||| |||| |||| ||||||| ||| | || || || ||| | || || Sbjct 53782 TTGATCACCAGTTTGGGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCT 53841 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 |||| || ||| |||||||| | || || | |||| || || || || || | || Sbjct 53842 ACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGA 53901 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || || || ||||| ||||||| ||||| || | |||| ||||||||||||||| || Sbjct 53902 CCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACG 53961 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC-TC-- 30061 || || |||||||| | ||||||||| ||||| || ||||| || ||| ||| || Sbjct 53962 CCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 54020 Query 30062 ----ACGTAAAACTGACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTT 30116 ||||| ||||| | | ||| ||||||||| || || ||||| | |||| Sbjct 54021 GGAGACGTAGAACTG-CGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTA 54079 Query 30117 TGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA 30176 || ||||| || ||| ||| |||||||| || || || ||| ||||| ||| | Sbjct 54080 CTGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGA 54139 Query 30177 CGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTAC 30235 | | ||| ||| || | ||| | || | ||||| | | | || || | ||| Sbjct 54140 TTACCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGC-CATAC 54198 Query 30236 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 ||||| || || |||| ||||||||| || |||||||| ||||| || || Sbjct 54199 TCTGCGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCC 54248 >seq22465 Length=63631 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 49128 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 49187 || ||||| | ||||||||||||||| | ||| || |||||||| ||||| || || Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290 Query 49188 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 49247 || || || || |||| |||||| ||||||| || ||||| | ||||||| |||| Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230 Query 49248 GGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCC 49283 || | || ||| |||||| ||||| || | |||| Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406197402411348