Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 111 1e-19
seq22190 107 1e-18
seq20501 82.4 5e-11
>seq5502
Length=68615
Score = 111 bits (122), Expect = 1e-19
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || | |||| |||||| || ||||||||||| || || || ||
Sbjct 5829 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGT 5888
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | || || ||||| || || |||||||| || || || || | |||||||
Sbjct 5889 CCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 5948
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| || || | || ||||||| |||
Sbjct 5949 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGT 6007
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| ||||| ||||| || || || || || || ||||||
Sbjct 6008 GATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCATG 6047
Score = 102 bits (112), Expect = 5e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | ||||||||| ||||| || || || ||||||||| ||||| ||||| ||
Sbjct 6731 GCCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGA 6790
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || || |||| || ||||| || |||||||| ||||| ||||| || || || ||
Sbjct 6791 CAACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGG 6850
Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 6851 AATACCCTCCTTGTCCTGGATCTT 6874
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | |||||| | ||||| || || ||| ||||| || ||||| || || ||
Sbjct 6047 GCCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 6106
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| ||||| | |||||||| || || |||||||| || | |||||| || || || ||
Sbjct 6107 AAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 6166
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||| |||| || | || || | || ||||| |||||
Sbjct 6167 AATACCCTCCTTGTCCTGGATC-TTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCA 6225
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || | ||| || ||||| || || | || ||||| || || ||||||
Sbjct 6226 CCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6275
>seq22190
Length=927835
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| ||||| || |||||| || ||||| || || || | || ||
Sbjct 837287 AGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 837228
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || ||||| ||||| || || || ||||| ||||| || || | |||||||
Sbjct 837227 CCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCC 837168
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| || || ||| || |||| ||
Sbjct 837167 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGT 837109
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || ||||| || || ||||||||||| |||||||||
Sbjct 837108 GATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCATGTTG 837066
>seq20501
Length=31302
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||| || | |||| |||||| ||||||||||| || || || || ||
Sbjct 11126 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGG 11185
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || || || || || | |||||| || || || || | ||| ||
Sbjct 11186 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 11245
Query 34609 TTGTC 34613
|||||
Sbjct 11246 TTGTC 11250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314642071632827
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |