Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 159 3e-34
seq22430 152 4e-32
seq20501 152 4e-32
seq22190 140 3e-28
seq22266 125 6e-24
seq21441 86.0 5e-12
>seq5502
Length=68615
Score = 159 bits (176), Expect = 3e-34
Identities = 176/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || || ||||| ||||| | ||||| ||||| || || || ||
Sbjct 6959 CATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATC 6900
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| |||| |||| || || || || || ||||| || || || || || |||||
Sbjct 6899 CGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 6840
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165
||||| ||||| | |||||||| ||| |||| ||| | || |||| || |||||||
Sbjct 6839 GCAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGA-CGTACGTTGTCTGATTACA 6781
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| ||||||||||||||| | || ||||| |||||| | || ||||||||
Sbjct 6780 ACATCCAAAAGGAGTCGACCCTTCACTTGGTATTGCGTCTTCGTGGTGGCAT 6729
Score = 141 bits (156), Expect = 8e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || ||||| || ||||| |||||| | ||||| || || || || || ||
Sbjct 6503 CATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATTACGCTGGAGGTTGAGCCCTC 6444
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | ||||| | || || || || || ||||| || ||||| ||||| |||||
Sbjct 6443 CGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCA 6384
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| ||| | || | ||| || || ||||||||||| | ||| |||| || |||||
Sbjct 6383 GCAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAA 6324
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || ||||| || ||| | || |||||| | || | || ||||||||
Sbjct 6323 CATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGACTCCGCGGTGGCAT 6273
>seq22430
Length=315411
Score = 152 bits (168), Expect = 4e-32
Identities = 207/289 (72%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533
|||||||| |||||||| |||||| ||| || || || |||||||| || | ||||
Sbjct 156960 TGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGCA 157019
Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593
|||||||||| |||||||| | |||||| | || | || | | ||||| | | | |
Sbjct 157020 TGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTATG 157079
Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653
| || | | || || | || || | |||||||||||| | || ||||| || || |
Sbjct 157080 CGATCCTACTGAACGACAAGTATAGCCTCGATGGACGCGATCCCAACGGCTATGTGGGCT 157139
Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713
|||||||||| || ||||||| || ||| ||||||||||| ||| | || || |
Sbjct 157140 GTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGGAA 157199
Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762
|| |||| || ||||||||| | || || | |||||| |||| ||
Sbjct 157200 AGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGTCAA 157248
>seq20501
Length=31302
Score = 152 bits (168), Expect = 4e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| | || |||||||| || ||||||||
Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| || ||||| ||||||||||| || || || |||||
Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| ||||| || ||||||| | ||| | || || || |||
Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||| || || || ||||| ||||| |||| |||||
Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 11117
>seq22190
Length=927835
Score = 140 bits (154), Expect = 3e-28
Identities = 179/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 26971 TTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030
||||||||| | | |||||| || ||||| || ||| ||||||||||| | || |||
Sbjct 837053 TTTTTAATTCAGCCAACATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTT 837112
Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090
| || || || || ||||| | ||||||| || || || || || ||||| || |
Sbjct 837113 TGGAGGTTGAGCCTTCCGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGG 837172
Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150
| || || || || || ||||| || || | |||||| ||||| ||||||| | |
Sbjct 837173 GAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCA 837232
Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210
|| | ||||| |||||||| || |||||||| ||| | || ||||| | || |||| |
Sbjct 837233 CCTTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGCCTGCGTG 837292
Query 27211 GTGGCAT 27217
|||||||
Sbjct 837293 GTGGCAT 837299
>seq22266
Length=384576
Score = 125 bits (138), Expect = 6e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
||||||| || || || ||||| || ||||||||| | || || | || ||||| || |
Sbjct 109385 CCATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTT 109326
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| ||| | || |||| || || || || || ||||| || ||||| || || ||||
Sbjct 109325 CGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 109266
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| |||||| | || | ||||||||| || |||| || | ||| | || || ||||
Sbjct 109265 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACA 109206
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| || |||||||||||| | ||| |||| | || |||| ||||| ||
Sbjct 109205 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTCCGCCTGCGTGGTGGTAT 109154
>seq21441
Length=81305
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 49825 CCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCC 49884
||||| || || | |||||||| | || || || ||| | | ||| ||| |||||
Sbjct 12902 CCCGGCAAGCGAAACTGGTTGAAGGTCAAGAAGGATTACCTTTTCGAAGGCAAGATGGCT 12843
Query 49885 GATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGC 49941
|||| | || ||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 12842 GATACAGCGGACTTGGTTGTCCTGGGTGCATGGTACGGATCTGGAAAAAAGGGTGGC 12786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434794344962880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |