Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5502 159 3e-34 seq22430 152 4e-32 seq20501 152 4e-32 seq22190 140 3e-28 seq22266 125 6e-24 seq21441 86.0 5e-12 >seq5502 Length=68615 Score = 159 bits (176), Expect = 3e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||| ||||| | ||||| ||||| || || || || Sbjct 6959 CATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATC 6900 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 6899 CGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 6840 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| ||||| | |||||||| ||| |||| ||| | || |||| || ||||||| Sbjct 6839 GCAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGA-CGTACGTTGTCTGATTACA 6781 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||||||||||||| | || ||||| |||||| | || |||||||| Sbjct 6780 ACATCCAAAAGGAGTCGACCCTTCACTTGGTATTGCGTCTTCGTGGTGGCAT 6729 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||| || ||||| |||||| | ||||| || || || || || || Sbjct 6503 CATGCAGATCTTCGTAAAGACCCTGACTGGCAAGACCATTACGCTGGAGGTTGAGCCCTC 6444 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || || || || ||||| || ||||| ||||| ||||| Sbjct 6443 CGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGATCA 6384 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||| || || ||||||||||| | ||| |||| || ||||| Sbjct 6383 GCAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAA 6324 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || |||||| | || | || |||||||| Sbjct 6323 CATCCAGAAGGAATCCACCCTTCACTTGGTTCTCCGACTCCGCGGTGGCAT 6273 >seq22430 Length=315411 Score = 152 bits (168), Expect = 4e-32 Identities = 207/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||| |||||||| |||||| ||| || || || |||||||| || | |||| Sbjct 156960 TGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGCA 157019 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||||||||| |||||||| | |||||| | || | || | | ||||| | | | | Sbjct 157020 TGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTATG 157079 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | || | | || || | || || | |||||||||||| | || ||||| || || | Sbjct 157080 CGATCCTACTGAACGACAAGTATAGCCTCGATGGACGCGATCCCAACGGCTATGTGGGCT 157139 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 |||||||||| || ||||||| || ||| ||||||||||| ||| | || || | Sbjct 157140 GTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGGAA 157199 Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 || |||| || ||||||||| | || || | |||||| |||| || Sbjct 157200 AGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGTCAA 157248 >seq20501 Length=31302 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || |||||||| Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | || || || ||| Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || || || ||||| ||||| |||| ||||| Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 11117 >seq22190 Length=927835 Score = 140 bits (154), Expect = 3e-28 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 26971 TTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 ||||||||| | | |||||| || ||||| || ||| ||||||||||| | || ||| Sbjct 837053 TTTTTAATTCAGCCAACATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTT 837112 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 | || || || || ||||| | ||||||| || || || || || ||||| || | Sbjct 837113 TGGAGGTTGAGCCTTCCGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGG 837172 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 | || || || || || ||||| || || | |||||| ||||| ||||||| | | Sbjct 837173 GAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCA 837232 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 || | ||||| |||||||| || |||||||| ||| | || ||||| | || |||| | Sbjct 837233 CCTTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGCCTGCGTG 837292 Query 27211 GTGGCAT 27217 ||||||| Sbjct 837293 GTGGCAT 837299 >seq22266 Length=384576 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || ||||| || ||||||||| | || || | || ||||| || | Sbjct 109385 CCATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTT 109326 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| || || || || || ||||| || ||||| || || |||| Sbjct 109325 CGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 109266 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | ||||||||| || |||| || | ||| | || || |||| Sbjct 109265 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACA 109206 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | ||| |||| | || |||| ||||| || Sbjct 109205 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTCCGCCTGCGTGGTGGTAT 109154 >seq21441 Length=81305 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 49825 CCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCC 49884 ||||| || || | |||||||| | || || || ||| | | ||| ||| ||||| Sbjct 12902 CCCGGCAAGCGAAACTGGTTGAAGGTCAAGAAGGATTACCTTTTCGAAGGCAAGATGGCT 12843 Query 49885 GATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGC 49941 |||| | || ||||| || |||||||||||||||| |||||||||||||||||| Sbjct 12842 GATACAGCGGACTTGGTTGTCCTGGGTGCATGGTACGGATCTGGAAAAAAGGGTGGC 12786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434794344962880