Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq22232 168 6e-37 >seq22232 Length=226448 Score = 168 bits (186), Expect = 6e-37 Identities = 412/622 (66%), Gaps = 8/622 (1%) Strand=Plus/Plus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 ||| ||||| |||| || | ||| || ||||| ||||| | || ||||| || || Sbjct 53844 GTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGACC 53903 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 | |||||||||||||||| ||||| || ||||| || ||||| || ||||| || Sbjct 53904 CGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACGCC 53963 Query 6673 TAACCCCATGTCTCCCGATCGT-TGATAGAGCTGGCAGGACAGCTCCCC------ATTCG 6725 | |||||||| || || | || || ||||||||||| || || || | | Sbjct 53964 CAGGCCCATGTC-GGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGG 54022 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| ||||||||| || ||||||||| || | || | Sbjct 54023 AGACGTAGAACTGCGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTACTG 54082 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| || |||| | || | || || || ||| ||| | ||||||||| | Sbjct 54083 GATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGATTA 54142 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905 | | ||| |||||| |||| ||| | |||||| | |||| | |||||| | Sbjct 54143 CCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGCCATACTCTG 54202 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | ||||||||| || || |||||||||| ||||| | | || | Sbjct 54203 CGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCCGACAGCGCGCTCCG 54262 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 | |||| | |||||||| || || | | | || ||||||||| | ||| | Sbjct 54263 TGTGCCCCAGATTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACTTTCT 54322 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 || | ||| ||||| || ||| || ||| ||||| |||||||| ||| ||| Sbjct 54323 TGGCCTGCAGCAGCTTGGCGTCCGTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCA 54382 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATC 7145 | || | | || || || || ||||| || ||||| | | | |||| | | Sbjct 54383 CACCGCGAAAAAAGACGCGCTTGGTGGTCAGTAGAGGAAAGGACTCTCTCATGTTGAAGC 54442 Query 7146 GGGCCTGTGTGCCGAACACGGA 7167 | ||| ||||||||||||| Sbjct 54443 GCATCTGGCTGCCGAACACGGA 54464 Score = 168 bits (186), Expect = 6e-37 Identities = 412/622 (66%), Gaps = 8/622 (1%) Strand=Plus/Minus Query 34178 TCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACG 34237 ||||||||||||| ||| || | |||| | | | ||||| || ||||| || Sbjct 54464 TCCGTGTTCGGCAGCCAGATGCGCTTCAACATGAGAGAGTCCTTTCCTCTACTGACCACC 54405 Query 34238 AAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACG 34297 || || || | | || |||| ||| |||||||| ||||| ||| || ||| Sbjct 54404 AAGCGCGTCTTTTTTCGCGGTGTGGCCGAAGAGCTGCTCTGGTTTGTGGCCGGCAAAACG 54345 Query 34298 AACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGAC 34357 || ||||| ||| | || | ||| | ||||||||| || | | | || Sbjct 54344 GACGCCAAGCTGCTGCAGGCCAAGAAAGTGCACTTCTGGGACGGGAACAGCACCAGGGAG 54285 Query 34358 TTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGG 34417 || |||||||| | |||| | | || | | ||||| |||||||||| || || Sbjct 54284 TTCCTGGACAATCTGGGGCACACGGAGCGCGCTGTCGGCGATCTGGGCCCGGTGTATGGT 54225 Query 34418 TTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAG 34477 ||||||||| | |||||||| || |||||| | |||| | |||||| | ||| || Sbjct 54224 TTCCAGTGGCGGCACTTTGGCGCAGAGTATGGCACCTGCGAGGACGACTATACTGGAAAG 54165 Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGG 34537 || |||||| ||| | || ||||||||| | ||| ||| || || || | Sbjct 54164 GGCATCGACCAGTTGCGTCAGGTAATCGACACCATCAAGAAGAATCCCTCGGATAGGCGC 54105 Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597 || | |||| || ||||| || || | || ||||||||| || ||||||||| Sbjct 54104 ATTATCATGTCAGCTTGGAATCCAGTAGACATACCGAAGATGGCGCTGCCGCCGTGCCAC 54045 Query 34598 ACCCTCTGCCAATTCTACGTCGCGAAT------GGGGAGCTGTCCTGCCAGCTCTATCA- 34650 ||| || ||||||||| | | || || || ||||||||||| || || Sbjct 54044 TGCCTAGCGCAGTTCTACGTCTCCCAGACGCGCGGCGAACTCTCCTGCCAGCTGTACCAG 53985 Query 34651 ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCAC 34710 | || || |||||||| | || ||||| || ||||| || ||||| || ||||| Sbjct 53984 AGGAGCGCC-GACATGGGCCTGGGCGTGCCCTTTAACATCGCCTCCTACGCCCTTCTCAC 53926 Query 34711 GTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGA 34770 |||||||||||||||| ||| || ||||| || | ||||| ||||| || || Sbjct 53925 TCACATGATCGCTCATGTTACGGGTCTGAAGCCTGGCGACTTCGTGCACACGTTTGGCGA 53866 Query 34771 TGCGCATATCTACCTGAACCAC 34792 | | || |||| ||||| ||| Sbjct 53865 TACCCACGTCTATCTGAATCAC 53844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448134538753680