Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 168 6e-37
>seq22232
Length=226448
Score = 168 bits (186), Expect = 6e-37
Identities = 412/622 (66%), Gaps = 8/622 (1%)
Strand=Plus/Plus
Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612
||| ||||| |||| || | ||| || ||||| ||||| | || ||||| || ||
Sbjct 53844 GTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGACC 53903
Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672
| |||||||||||||||| ||||| || ||||| || ||||| || ||||| ||
Sbjct 53904 CGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACGCC 53963
Query 6673 TAACCCCATGTCTCCCGATCGT-TGATAGAGCTGGCAGGACAGCTCCCC------ATTCG 6725
| |||||||| || || | || || ||||||||||| || || || | |
Sbjct 53964 CAGGCCCATGTC-GGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGG 54022
Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
||||||||| || ||| ||||||||| || ||||||||| || | || |
Sbjct 54023 AGACGTAGAACTGCGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTACTG 54082
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
| ||||| || |||| | || | || || || ||| ||| | ||||||||| |
Sbjct 54083 GATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGATTA 54142
Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905
| | ||| |||||| |||| ||| | |||||| | |||| | |||||| |
Sbjct 54143 CCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGCCATACTCTG 54202
Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965
| |||||||| | ||||||||| || || |||||||||| ||||| | | || |
Sbjct 54203 CGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCCGACAGCGCGCTCCG 54262
Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025
| |||| | |||||||| || || | | | || ||||||||| | ||| |
Sbjct 54263 TGTGCCCCAGATTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACTTTCT 54322
Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085
|| | ||| ||||| || ||| || ||| ||||| |||||||| ||| |||
Sbjct 54323 TGGCCTGCAGCAGCTTGGCGTCCGTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCA 54382
Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATC 7145
| || | | || || || || ||||| || ||||| | | | |||| | |
Sbjct 54383 CACCGCGAAAAAAGACGCGCTTGGTGGTCAGTAGAGGAAAGGACTCTCTCATGTTGAAGC 54442
Query 7146 GGGCCTGTGTGCCGAACACGGA 7167
| ||| |||||||||||||
Sbjct 54443 GCATCTGGCTGCCGAACACGGA 54464
Score = 168 bits (186), Expect = 6e-37
Identities = 412/622 (66%), Gaps = 8/622 (1%)
Strand=Plus/Minus
Query 34178 TCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACG 34237
||||||||||||| ||| || | |||| | | | ||||| || ||||| ||
Sbjct 54464 TCCGTGTTCGGCAGCCAGATGCGCTTCAACATGAGAGAGTCCTTTCCTCTACTGACCACC 54405
Query 34238 AAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACG 34297
|| || || | | || |||| ||| |||||||| ||||| ||| || |||
Sbjct 54404 AAGCGCGTCTTTTTTCGCGGTGTGGCCGAAGAGCTGCTCTGGTTTGTGGCCGGCAAAACG 54345
Query 34298 AACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGAC 34357
|| ||||| ||| | || | ||| | ||||||||| || | | | ||
Sbjct 54344 GACGCCAAGCTGCTGCAGGCCAAGAAAGTGCACTTCTGGGACGGGAACAGCACCAGGGAG 54285
Query 34358 TTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGG 34417
|| |||||||| | |||| | | || | | ||||| |||||||||| || ||
Sbjct 54284 TTCCTGGACAATCTGGGGCACACGGAGCGCGCTGTCGGCGATCTGGGCCCGGTGTATGGT 54225
Query 34418 TTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAG 34477
||||||||| | |||||||| || |||||| | |||| | |||||| | ||| ||
Sbjct 54224 TTCCAGTGGCGGCACTTTGGCGCAGAGTATGGCACCTGCGAGGACGACTATACTGGAAAG 54165
Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGG 34537
|| |||||| ||| | || ||||||||| | ||| ||| || || || |
Sbjct 54164 GGCATCGACCAGTTGCGTCAGGTAATCGACACCATCAAGAAGAATCCCTCGGATAGGCGC 54105
Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597
|| | |||| || ||||| || || | || ||||||||| || |||||||||
Sbjct 54104 ATTATCATGTCAGCTTGGAATCCAGTAGACATACCGAAGATGGCGCTGCCGCCGTGCCAC 54045
Query 34598 ACCCTCTGCCAATTCTACGTCGCGAAT------GGGGAGCTGTCCTGCCAGCTCTATCA- 34650
||| || ||||||||| | | || || || ||||||||||| || ||
Sbjct 54044 TGCCTAGCGCAGTTCTACGTCTCCCAGACGCGCGGCGAACTCTCCTGCCAGCTGTACCAG 53985
Query 34651 ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCAC 34710
| || || |||||||| | || ||||| || ||||| || ||||| || |||||
Sbjct 53984 AGGAGCGCC-GACATGGGCCTGGGCGTGCCCTTTAACATCGCCTCCTACGCCCTTCTCAC 53926
Query 34711 GTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGA 34770
|||||||||||||||| ||| || ||||| || | ||||| ||||| || ||
Sbjct 53925 TCACATGATCGCTCATGTTACGGGTCTGAAGCCTGGCGACTTCGTGCACACGTTTGGCGA 53866
Query 34771 TGCGCATATCTACCTGAACCAC 34792
| | || |||| ||||| |||
Sbjct 53865 TACCCACGTCTATCTGAATCAC 53844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448134538753680
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