Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq22190 120 2e-22 seq5502 113 3e-20 >seq22190 Length=927835 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||| ||||| || || || |||| ||||| | || Sbjct 837525 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 837584 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || || || ||||| ||||| ||||| |||| || | Sbjct 837585 GATACCATTGAGAAC--GTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACC 837642 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || || || ||||| |||| ||||| ||||||||| |||| Sbjct 837643 AGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACA 837702 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||||||||||||||| ||||| ||||||| || Sbjct 837703 ACATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGTGG 837751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/233 (69%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||| ||||| || || || |||| ||||| | || Sbjct 837298 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACC-TTGAGGTCGAGCCCTCC 837356 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| || || ||||| ||||| ||||| |||| | Sbjct 837357 GA-----TACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAG 837411 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || ||||| || || || ||||| |||| ||||| ||||||||| | Sbjct 837412 ACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACT 837471 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || ||| || | || ||||| | ||| ||||||| ||| Sbjct 837472 ACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGC 837524 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||||||||| |||| Sbjct 837163 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAACAGCTGGAA 837222 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||||| ||||||||||| || ||| || | || ||||| | Sbjct 837223 GATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTC 837282 Query 28003 CGTTTGCGTGGCGGC 28017 || ||||||| ||| Sbjct 837283 CGCCTGCGTGGTGGC 837297 >seq5502 Length=68615 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || || ||||| ||| ||||| |||| ||||| || Sbjct 6958 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATCC 6899 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || || || || ||||| || ||| |||| || | Sbjct 6898 GACACGATCGAGAAT--GTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 6841 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||| |||||||| || ||| |||| |||| ||| | ||||| ||||||| Sbjct 6840 AGCAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGACGTACGTTGTCTGATTACA 6781 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| || | || ||||| |||||| | ||||| ||| Sbjct 6780 ACATCCAAAAGGAGTCGACCCTTCACTTGGTATTGCGTCTTCGTGGTGGC 6731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355763432331213