Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 120 2e-22
seq5502 113 3e-20
>seq22190
Length=927835
Score = 120 bits (132), Expect = 2e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || ||||| ||||| || || || |||| ||||| | ||
Sbjct 837525 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 837584
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | || || || ||||| ||||| ||||| |||| || |
Sbjct 837585 GATACCATTGAGAAC--GTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACC 837642
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || || || ||||| || || || ||||| |||| ||||| ||||||||| ||||
Sbjct 837643 AGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACTACA 837702
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || ||| ||||||||||||||| ||||| ||||||| ||
Sbjct 837703 ACATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGTGG 837751
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/233 (69%), Gaps = 11/233 (5%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || ||||| ||||| || || || |||| ||||| | ||
Sbjct 837298 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACC-TTGAGGTCGAGCCCTCC 837356
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| ||| |||| || || ||||| ||||| ||||| |||| |
Sbjct 837357 GA-----TACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAG 837411
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || || || ||||| || || || ||||| |||| ||||| ||||||||| |
Sbjct 837412 ACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCACCTTGTCCGACT 837471
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||||| || ||| || | || ||||| | ||| ||||||| |||
Sbjct 837472 ACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGC 837524
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||||||||| ||||
Sbjct 837163 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGAAAACAGCTGGAA 837222
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||||| ||||||||| ||||||||||| || ||| || | || ||||| |
Sbjct 837223 GATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTC 837282
Query 28003 CGTTTGCGTGGCGGC 28017
|| ||||||| |||
Sbjct 837283 CGCCTGCGTGGTGGC 837297
>seq5502
Length=68615
Score = 113 bits (124), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || ||||| || || ||||| ||| ||||| |||| ||||| ||
Sbjct 6958 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATCC 6899
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| | ||| || || || || ||||| || ||| |||| || |
Sbjct 6898 GACACGATCGAGAAT--GTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 6841
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || ||||| |||||||| || ||| |||| |||| ||| | ||||| |||||||
Sbjct 6840 AGCAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGACGTACGTTGTCTGATTACA 6781
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||||| ||| || | || ||||| |||||| | ||||| |||
Sbjct 6780 ACATCCAAAAGGAGTCGACCCTTCACTTGGTATTGCGTCTTCGTGGTGGC 6731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355763432331213
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |