Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 104 2e-17
seq22190 87.8 2e-12
>seq5502
Length=68615
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || ||| || || || || || || |||| ||| |||||| | || |||
Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || |||||||||||||| | ||| | || ||| || |||
Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 7325
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | ||||||| | |||||| |||| || || | ||
Sbjct 7326 ATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTG 7385
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| |||| || || |||||||| ||||| ||
Sbjct 7386 CCAGTCAATGTCTTCACAAAGATCTGCATTTT 7417
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || ||| || || || || || || |||| ||| |||||| | || |||
Sbjct 6066 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 6125
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || ||||||||||| || | ||| | | ||| |||||| |
Sbjct 6126 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6185
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | ||| ||| | |||||| || | || || ||||
Sbjct 6186 ATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTG 6245
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || |||||||||||
Sbjct 6246 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || | ||| ||| || || || |||||||||| || || ||| | || ||
Sbjct 5837 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCTTC 5896
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| || || || | ||||||||| || | ||| | | ||| ||||||
Sbjct 5897 CAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 5956
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | ||||| | || || |||| ||||| ||||
Sbjct 5957 GATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTTT 6016
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| || || || |||||||||||
Sbjct 6017 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
>seq22190
Length=927835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134
|||||||| | ||| ||| || || || || || |||| |||| || ||| |||| ||
Sbjct 837733 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCTC 837675
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||| ||||| || | |||||||||||| | ||| | || || ||||||
Sbjct 837674 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 837615
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| || | || | | |||||| | ||| || || | ||||| | ||
Sbjct 837614 GATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 837555
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || || |||||||| |||||
Sbjct 837554 GCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/211 (70%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCAT 39133
|||||| || || || ||| || || || || || |||| |||| || ||| |||| |
Sbjct 837506 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCT 837448
Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193
| | ||| ||||| ||||| || | |||||||||||| | ||| | || || ||||||
Sbjct 837447 CCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCT 837388
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| || | || | | |||||| | ||| || | || ||||| | |
Sbjct 837387 GGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCT-CAAGGTGATGGTCT 837329
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || || |||||||| |||||
Sbjct 837328 TGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429426140549747
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |