Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq22266 134 3e-26
seq7135 127 5e-24
seq22190 118 3e-21
seq20501 118 3e-21
seq18489 118 3e-21
>seq22266
Length=384576
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || || || || || || |||| ||||| || | || || | |||||
Sbjct 109172 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 109231
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || || || || ||||| || ||||||||
Sbjct 109232 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 109291
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||||||||| || | ||||| || || ||||| |||
Sbjct 109292 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 109351
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||||| | ||| | ||||||
Sbjct 109352 TTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
>seq7135
Length=1814
Score = 127 bits (140), Expect = 5e-24
Identities = 129/168 (77%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| ||||||| || ||| |||| || ||||| ||| |||| ||||| ||| | || ||
Sbjct 372 CAAATTTACAATGTAATTGTTACTGCACATGCTTTTATTATAATTTTTTTTATAGTAATA 431
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || || || |||||||| || |||||||| | || ||||| |||
Sbjct 432 CCAATTATAATTGGAGGATTTGGTAATTGATTAGTACCTTTAATATTAGGAGCTCCAGAT 491
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|| || || ||| | | || |||||||| |||||||||||||| |||
Sbjct 492 ATAGCATTCCCACGAATAAATAATATAAGATTTTGATTACTACCCCCT 539
Score = 98.7 bits (108), Expect = 2e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || |||||||||||||| ||||||||||| || | ||||| || ||||| ||||
Sbjct 944 TTCTGGGTGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCTGC 885
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| ||||||||| |||||| ||||||| || |||||
Sbjct 884 TGGGTCAAAAAAGGAAGTATTTAAATTTCGGTCTGTTAA 846
>seq22190
Length=927835
Score = 118 bits (130), Expect = 3e-21
Identities = 145/197 (74%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| || || || || |||| ||||| |||| ||| || | || ||
Sbjct 837508 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCC 837449
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| ||||| | || || ||||| || ||||| |||||||||||
Sbjct 837448 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 837389
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || |||||| |||||||| || |||| || || || || ||||| |||
Sbjct 837388 TGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTC-AAGGTGATGGTC 837330
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| || | ||| ||
Sbjct 837329 TTGCCAGTGAGAGTCTT 837313
Score = 116 bits (128), Expect = 9e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | || | |||||| || || |||| ||||| |||| ||| ||
Sbjct 837746 ACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGT 837687
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || | |||||| ||||| ||||| | || || ||||| || ||||| ||
Sbjct 837686 GCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCC 837627
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| ||||| || |||||| || ||||| || |||| || || || |
Sbjct 837626 TTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAG 837567
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| || | ||| ||
Sbjct 837566 GGTGATGGTCTTGCCAGTGAGAGTCTT 837540
>seq20501
Length=31302
Score = 118 bits (130), Expect = 3e-21
Identities = 161/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | ||| | |||||| || || || | || || || | | ||
Sbjct 11122 ACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 11181
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||||||||| || || || || || || ||||| ||
Sbjct 11182 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 11241
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| ||||| || ||||| || ||| |||||| ||||| || | ||| || || |
Sbjct 11242 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAG 11301
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||||||||| | || || | ||| | ||||| ||
Sbjct 11302 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 11346
>seq18489
Length=1056
Score = 118 bits (130), Expect = 3e-21
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || || ||| | || || ||||| ||| |||| ||||| ||| | || ||
Sbjct 319 CAAATTTATAATGTAATTGTAACTGCTCATGCTTTTATTATAATTTTTTTTATAGTAATA 260
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || |||||||| ||||| || |||||||| | || || || |||
Sbjct 259 CCTATTATAATTGGAGGATTCGGAAACTGATTAGTACCTTTAATATTAGGAGCCCCAGAT 200
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|| || || ||| | | || |||||||| |||||||||||||| |||
Sbjct 199 ATAGCATTCCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192182541516386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |