Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq22232 141 8e-29 seq22465 96.9 3e-15 >seq22232 Length=226448 Score = 141 bits (156), Expect = 8e-29 Identities = 246/353 (70%), Gaps = 10/353 (3%) Strand=Plus/Plus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 || ||| |||| |||| ||||||| ||| | || || || | | | || || Sbjct 53782 TTGATCACCAGTTTGGGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCT 53841 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 ||||| | || |||||||| | ||| || | ||||| || || || || || | || Sbjct 53842 ACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGA 53901 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || || || ||||| ||||||| ||||| || | |||| |||||||||||||||||| Sbjct 53902 CCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACG 53961 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGC-TC-- 29833 || || |||||||| | ||||||||| |||||||| ||||| || ||| ||| || Sbjct 53962 CCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 54020 Query 29834 ----ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTT 29888 ||||| ||||| | | |||| |||||||| || || ||||| | |||| Sbjct 54021 GGAGACGTAGAACTG-CGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTA 54079 Query 29889 TGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 29941 || ||||| || ||| ||| |||||||| || || || ||| ||||| Sbjct 54080 CTGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATG 54132 >seq22465 Length=63631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 49933 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 49992 || ||||| | ||||||||||||||| | ||| || |||||||| ||||| || || Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290 Query 49993 TCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 50052 || || || || |||| |||||| ||||||| || ||||| | ||||||| |||| Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230 Query 50053 GGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCC 50088 || | || ||| ||||| ||||| || | |||| Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406050243348634