Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 141 8e-29
seq22465 96.9 3e-15
>seq22232
Length=226448
Score = 141 bits (156), Expect = 8e-29
Identities = 246/353 (70%), Gaps = 10/353 (3%)
Strand=Plus/Plus
Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656
|| ||| |||| |||| ||||||| ||| | || || || | | | || ||
Sbjct 53782 TTGATCACCAGTTTGGGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCT 53841
Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716
||||| | || |||||||| | ||| || | ||||| || || || || || | ||
Sbjct 53842 ACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGA 53901
Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776
|| || || ||||| ||||||| ||||| || | |||| ||||||||||||||||||
Sbjct 53902 CCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACG 53961
Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGC-TC-- 29833
|| || |||||||| | ||||||||| |||||||| ||||| || ||| ||| ||
Sbjct 53962 CCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 54020
Query 29834 ----ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTT 29888
||||| ||||| | | |||| |||||||| || || ||||| | ||||
Sbjct 54021 GGAGACGTAGAACTG-CGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTA 54079
Query 29889 TGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 29941
|| ||||| || ||| ||| |||||||| || || || ||| |||||
Sbjct 54080 CTGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATG 54132
>seq22465
Length=63631
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 49933 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 49992
|| ||||| | ||||||||||||||| | ||| || |||||||| ||||| || ||
Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290
Query 49993 TCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 50052
|| || || || |||| |||||| ||||||| || ||||| | ||||||| ||||
Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230
Query 50053 GGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCC 50088
|| | || ||| ||||| ||||| || | ||||
Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406050243348634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |