Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 165 6e-36
seq22465 102 6e-17
>seq22232
Length=226448
Score = 165 bits (182), Expect = 6e-36
Identities = 320/469 (68%), Gaps = 10/469 (2%)
Strand=Plus/Plus
Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 27150
|| ||| |||| |||| ||||||| ||| | || || || ||| | || ||
Sbjct 53782 TTGATCACCAGTTTGGGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCT 53841
Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210
||||||| ||| |||||||| | || || | ||||| || || || || || | ||
Sbjct 53842 ACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGA 53901
Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270
|| || || ||||| ||||||| ||||| || | |||| ||||||||||||||| ||
Sbjct 53902 CCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACG 53961
Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT--- 27327
|| || |||||||| | ||||||||| ||||| || ||||| || || ||| |
Sbjct 53962 CCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCC-GCGCGTCTG 54020
Query 27328 ----ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 27383
||||| ||||| || | ||||||||| || || ||||| | ||||
Sbjct 54021 GGAGACGTAGAACTGCGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTAC 54080
Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443
|| ||||| || ||| ||| |||||||| || || || ||| ||||| ||| |
Sbjct 54081 TGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGAT 54140
Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACT 27502
| | ||| ||| || | ||| | || | ||||| | | | || || | ||||
Sbjct 54141 TACCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGC-CATACT 54199
Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551
|||| || || |||| ||| ||||| || |||||||| ||||| || ||
Sbjct 54200 CTGCGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCC 54248
>seq22465
Length=63631
Score = 102 bits (112), Expect = 6e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 44920 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 44979
|| ||||| | ||||||||||||||| | ||| || |||||||| ||||| || ||
Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290
Query 44980 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 45039
|| || || || |||| |||||| ||||||| || ||||| | ||||||| ||||
Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230
Query 45040 GGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCC 45075
|| | || ||| |||||| ||||| || | ||||
Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369404437622789
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |