Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq22232 165 6e-36 seq22465 102 6e-17 >seq22232 Length=226448 Score = 165 bits (182), Expect = 6e-36 Identities = 320/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Plus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 27150 || ||| |||| |||| ||||||| ||| | || || || ||| | || || Sbjct 53782 TTGATCACCAGTTTGGGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCT 53841 Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210 ||||||| ||| |||||||| | || || | ||||| || || || || || | || Sbjct 53842 ACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGA 53901 Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || || || ||||| ||||||| ||||| || | |||| ||||||||||||||| || Sbjct 53902 CCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACG 53961 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT--- 27327 || || |||||||| | ||||||||| ||||| || ||||| || || ||| | Sbjct 53962 CCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCC-GCGCGTCTG 54020 Query 27328 ----ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 27383 ||||| ||||| || | ||||||||| || || ||||| | |||| Sbjct 54021 GGAGACGTAGAACTGCGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTAC 54080 Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443 || ||||| || ||| ||| |||||||| || || || ||| ||||| ||| | Sbjct 54081 TGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGAT 54140 Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACT 27502 | | ||| ||| || | ||| | || | ||||| | | | || || | |||| Sbjct 54141 TACCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGC-CATACT 54199 Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 |||| || || |||| ||| ||||| || |||||||| ||||| || || Sbjct 54200 CTGCGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCC 54248 >seq22465 Length=63631 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 44920 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 44979 || ||||| | ||||||||||||||| | ||| || |||||||| ||||| || || Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290 Query 44980 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 45039 || || || || |||| |||||| ||||||| || ||||| | ||||||| |||| Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230 Query 45040 GGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCC 45075 || | || ||| |||||| ||||| || | |||| Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369404437622789