Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5502 114 3e-20 seq22190 107 4e-18 seq20501 107 4e-18 seq22266 100 7e-16 >seq5502 Length=68615 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || || || || ||||||||||| |||| | |||| ||||| Sbjct 7202 GAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATC 7261 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| || | ||||||||| | | || || ||||| || Sbjct 7262 TTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATC 7321 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || ||| |||| | | || ||| ||| || || | |||||| || Sbjct 7322 CTGAATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGT 7381 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | |||||||| |||| ||||||||| Sbjct 7382 CTTGCCAGTCAATGTCTTCACAAAGATCTGCATTTT 7417 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| | |||| |||||||| | Sbjct 6068 CAAG-TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAA 6126 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||| || | | || || ||||| || || | Sbjct 6127 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGA 6186 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | |||| || ||| || ||||| ||||| ||||||| Sbjct 6187 TCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTGC 6246 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| ||||| Sbjct 6247 CAGTCAGGGTCTTCACGAAGATTTGCAT 6274 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| ||||||||||||||||| | || || | || || || | Sbjct 6752 CAAG-TGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCGTCCTCCA 6810 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| | | |||||| || | | || || ||||| || || | Sbjct 6811 GTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGA 6870 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | |||| || ||| || ||||| ||||| ||||||| Sbjct 6871 TCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAATGGTTTTGC 6930 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| ||||| Sbjct 6931 CAGTCAGGGTCTTCACGAAGATTTGCAT 6958 Score = 100 bits (110), Expect = 7e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | ||||| || || || || ||||||||||| |||| | || | Sbjct 6512 GAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCG 6571 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| || ||||| || || | |||||| || | | ||||| Sbjct 6572 GCCATCTTCCAACTGCTTT--CCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCC 6629 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || ||| | || | | |||| || ||| ||||| ||| Sbjct 6630 TCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGA 6689 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || | ||||| ||||||| ||||| Sbjct 6690 GTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | ||||| || || || || ||||||||||| || | | || | Sbjct 6284 GAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCG 6343 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| || ||||| || || | ||||| || | | ||| || Sbjct 6344 GCCATCTTCCAATTGCTTT--CCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCC 6401 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| | || | | |||| || ||| || || || Sbjct 6402 TCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGC 6461 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || ||||| ||||||| |||||| Sbjct 6462 GTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 >seq22190 Length=927835 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| |||| || || | |||||||| | Sbjct 837276 CAAG-TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCCA 837218 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| | | ||||||||| | | ||||| ||||| || || | Sbjct 837217 GCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGA 837158 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | | || ||| ||| || || | ||| || || |||| Sbjct 837157 TCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGC 837098 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | ||||||||| || | ||||| || Sbjct 837097 CGGTCAAAGTCTTCACAAAAATTTGCATGTT 837067 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| ||||| || ||||||||||| |||| || || | || || Sbjct 837736 AGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCC 837677 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | ||||||||| | | || |||||||| || Sbjct 837676 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 837617 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || |||| | | | || || ||| || ||||| || || || Sbjct 837616 TGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTC 837557 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||||||||| || |||| |||||| Sbjct 837556 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| |||| || || | || || || | Sbjct 837503 CAAG-TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCCA 837445 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | | ||||||||| | | || |||||||| || || | Sbjct 837444 ACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 837385 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || |||| | | | || || ||| || ||||| || || || |||| Sbjct 837384 TTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTGATGGTCTTGC 837326 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| || |||| |||||| Sbjct 837325 CAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq20501 Length=31302 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || || ||||| || || | | || | |||||||| | Sbjct 11137 CAAG-TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCA 11195 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | |||||||| || || |||| Sbjct 11196 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 11255 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | |||| || || || |||||||| || || |||| Sbjct 11256 TCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGC 11315 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| ||||| ||||||| |||||| || Sbjct 11316 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 11346 >seq22266 Length=384576 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || ||||| || ||||||||||| || | | || | ||||| Sbjct 109171 GAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATC 109230 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | || || ||||| || Sbjct 109231 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 109290 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | |||| ||| ||| || || | || || || Sbjct 109291 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGT 109350 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || |||||||| | ||||| Sbjct 109351 CTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153483459215549