Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq22228 82.4 6e-11 >seq22228 Length=358660 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 107558 GTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGC-G 107616 |||||||| |||||| | ||| || ||| || || |||| ||||| |||| || ||| | Sbjct 288151 GTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGCGCCGTGCTCCT--TGCCG 288094 Query 107617 TA-GGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGC 107675 || ||||| ||||| || | ||| |||| || ||| | |||| || || |||||| Sbjct 288093 TAAGGATTGAAGTGCGGCCCGGATGACATGCAGCCGTTGGTGTTGTCACCGAACTCGTGC 288034 Query 107676 ACGTGAAAACCGTGCA 107691 ||||| || ||||||| Sbjct 288033 ACGTGGAATCCGTGCA 288018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421693891537144