Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 149 5e-31
seq22266 147 2e-30
seq22190 134 1e-26
seq20501 125 5e-24
>seq5502
Length=68615
Score = 149 bits (164), Expect = 5e-31
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||| ||||||||||| |||| || || | || ||
Sbjct 6066 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 6125
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||||| |||||||||||||| || | ||| ||||| |||
Sbjct 6126 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6185
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || ||||||| | |||||||| | ||||| || ||
Sbjct 6186 ATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTG 6245
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || ||||||||||||||||||||||||
Sbjct 6246 CCAGTCAGGGTCTTCACGAAGATTTGCATG 6275
Score = 149 bits (164), Expect = 5e-31
Identities = 174/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | ||| |||| |||||| || ||||||||||||||||||
Sbjct 6725 TTGCATGCCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTA 6784
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||| | | || |||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct 6785 ATCAGACAACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATC 6844
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||| ||||| ||| ||||| ||||| | | || ||||||| |
Sbjct 6845 TGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGG 6904
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| ||||| | ||||| || || || || ||||||||||||||||||||||||
Sbjct 6905 CTCGACCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6959
Score = 141 bits (156), Expect = 7e-29
Identities = 160/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| | ||| |||||| |||||||| ||||||| || ||| | || ||
Sbjct 5837 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCTTC 5896
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| ||||| |||||||||||||||||||||| || | || ||||| |||
Sbjct 5897 CAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 5956
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| |||| | |||| | ||||| || | || ||| || |||| || || || |
Sbjct 5957 GATCTTGGCCTTC-ACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTT 6015
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||| || | |||||| |||||||||||||||
Sbjct 6016 TTCCGGTCAAGGTCTTTACGAAGATTTGCATG 6047
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||| ||||||||||| || | || ||| | || |||
Sbjct 6294 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 6353
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||||| || || || || | ||| |||||||||| || | || ||||| |||
Sbjct 6354 AATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGG 6413
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| || | |||||||||| || || ||||||| |||||| |||||
Sbjct 6414 ATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTCTTG 6473
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || |||||||| |||||||| ||||||
Sbjct 6474 CCAGTCAGGGTCTTTACGAAGATCTGCATG 6503
Score = 127 bits (140), Expect = 1e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||| ||||||||||| || | || ||| | || |||
Sbjct 6978 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 7037
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| || || || || | |||||||||||||| || | || ||||| |||
Sbjct 7038 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 7097
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| || | |||||||| | | ||| || |||| || || ||||||
Sbjct 7098 ATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTT 7157
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || | |||||| |||||||||||||||
Sbjct 7158 CCGGTCAAGGTCTTTACGAAGATTTGCATG 7187
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||| ||||||||||| |||| || ||| | || |||
Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| || || || || | |||||||||||||| || | || ||||| |||
Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 6641
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| || | |||||||| | | ||||| || | || || || |||
Sbjct 6642 ATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTTT 6701
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || | |||||| |||||||||||||||
Sbjct 6702 CCGGTCAAGGTCTTTACGAAGATTTGCATG 6731
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||| ||||||||||| |||| || || | || ||
Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||||| ||||||||| |||| || | || ||||| |||
Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 7325
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || || |||| | |||||||||| ||||| |||||
Sbjct 7326 ATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTG 7385
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | |||||||| ||||| |||||
Sbjct 7386 CCAGTCAATGTCTTCACAAAGATCTGCAT 7414
>seq22266
Length=384576
Score = 147 bits (162), Expect = 2e-30
Identities = 161/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||| ||||| || |||||| ||||||||||| || | || ||| | || ||
Sbjct 109174 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 109233
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| ||||| ||||||| |||||||||||||| || | || ||||| |||
Sbjct 109234 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 109293
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | |||||||| | | |||||||||| || || |||||
Sbjct 109294 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 109353
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|| |||||||| |||||||| ||||||||| ||
Sbjct 109354 GCCGGTGAGGGTTTTCACGAAAATTTGCATGGTG 109387
>seq22190
Length=927835
Score = 134 bits (148), Expect = 1e-26
Identities = 174/234 (74%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | | ||||| ||| || || |||||| ||||||||||| ||
Sbjct 837527 CATGCCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 837468
Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
|| | || || || |||| |||| |||||| || |||||||||||||||||||| ||||
Sbjct 837467 GGACAAGGTG-CGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 837409
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284
|| | |||||||| ||| || || |||| | |||| | ||||| |||| ||
Sbjct 837408 GGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTC-ACGTTCTCGATGGTATCGGAGGGC 837350
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| |||| || || || ||||| || ||||| ||||| || ||||| ||||||
Sbjct 837349 TCGACCT-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837297
Score = 131 bits (144), Expect = 1e-25
Identities = 182/249 (73%), Gaps = 6/249 (2%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | | ||||| ||| || || |||||| ||||||||||| ||
Sbjct 837300 CATGCCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 837241
Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
|| | || | ||| | || |||||||| || ||||| |||||||| |||||||| ||||
Sbjct 837240 GGACAAGGT-GCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTG 837182
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284
|| | || ||||| ||| ||||| |||| | |||| | ||||| |||| |
Sbjct 837181 GGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCGGAAGGC 837123
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG--T 44342
|| ||||||| || || ||||| || || | |||||||| || ||||||||| || |
Sbjct 837122 TCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCATGTTGGCT 837063
Query 44343 GAATGAAAA 44351
|||| ||||
Sbjct 837062 GAATTAAAA 837054
Score = 131 bits (144), Expect = 1e-25
Identities = 149/195 (76%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204
|||||| ||||||||||| |||| | || || || |||| |||| |||||| || ||||
Sbjct 837716 CTCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGTCCGTCCTCCAACTGCTTGCCAGCAA 837658
Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264
|||||||||||||||| |||| || | |||||||| ||| || || |||| | |
Sbjct 837657 AGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTC-ACG 837599
Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323
||| | ||||| |||| || || ||||| | || || ||||| || ||||| |||||
Sbjct 837598 TTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTG 837539
Query 44324 ACGAAGATTTGCATG 44338
|| ||||| ||||||
Sbjct 837538 ACAAAGATCTGCATG 837524
>seq20501
Length=31302
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||| ||| | ||| |||||| || ||||| || || | |
Sbjct 11117 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11176
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || ||||||||||| || || ||||||| |||||||||||||| |||
Sbjct 11177 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11236
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| ||||| || ||| ||||| || | || | || ||||| | | ||| |||
Sbjct 11237 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACC 11296
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | || || ||||| |||||||||||||| |||||||| |||||
Sbjct 11297 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359890284307323
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