Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq22266 147 5e-30 seq22190 145 2e-29 seq20501 145 2e-29 seq5502 145 2e-29 >seq22266 Length=384576 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| ||||| || || || |||||| | |||||||| || ||| Sbjct 109380 CAAATTTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGAC 109321 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 109320 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 109261 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || | || || ||| || Sbjct 109260 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAACATC 109201 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 109200 CAGAAGGAGTCGACCCTTCATCTGGT 109175 >seq22190 Length=927835 Score = 145 bits (160), Expect = 2e-29 Identities = 158/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| ||| | || || || || ||||| | ||||| || || || Sbjct 837073 CAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 837132 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || ||||| || || |||||||| Sbjct 837133 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 837192 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | |||||||||||||||||||| ||||||||| | || |||| |||| || ||| | Sbjct 837193 CGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCAC-CTTGTCCGACTACAACAT 837251 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || || || |||| Sbjct 837252 CCAGAAGGAGTCTACCCTCCA-CTTG 837276 Score = 109 bits (120), Expect = 1e-18 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || || || |||||| | ||||| || ||| || Sbjct 837301 CAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCTT-GAGGTCGAGCCCTCCGAT 837359 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || || |||||||| ||||| || || || |||||||| Sbjct 837360 ACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 837419 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||| | || || ||| | || |||| |||| || ||| | Sbjct 837420 CGTTTGATCTTTGCTGGCAAGCAGTTGGAGGACGGACGCAC-CTTGTCCGACTACAACAT 837478 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || || || |||| Sbjct 837479 CCAGAAGGAGTCTACCCTCCA-CTTG 837503 >seq20501 Length=31302 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| ||| || ||| Sbjct 11340 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAC 11281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 11280 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 11221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || |||||| | Sbjct 11220 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAACATT 11161 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 11160 CAGAAGGAGTCCACTTTGCA-CTTG 11137 >seq5502 Length=68615 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || |||||||| |||||| | || || ||| ||| || Sbjct 6043 CAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCTGAT 5984 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || ||||| || || || ||||| Sbjct 5983 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 5924 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||| | ||||||||| | ||||| ||||||||||| || Sbjct 5923 CGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGACGCACTCTGTCCGATTATAACATC 5864 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 5863 CAGAAGGAGTCCACTTTGCA-CTTG 5840 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || |||||||| ||||| ||||| ||||| || ||| Sbjct 6727 CAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCTGAC 6668 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||||| || || ||||| || || || ||||| Sbjct 6667 ACCATTGAAAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAG 6608 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| ||| | |||||||| | || ||| |||| || ||| || Sbjct 6607 CGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCCGACTACAACATC 6548 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 6547 CAGAAGGAATCCACCCTTCA-CTTGGTT 6521 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || ||||| || |||||| | || || ||| || ||| Sbjct 7183 CAAATCTTCGTAAAGACCTTGACCGGAAAGACCATCACCTTGGAAGTCGAACCATCTGAC 7124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||||| || || ||||| || || || ||||| Sbjct 7123 ACCATTGAAAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAG 7064 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| ||| | |||||||| | || ||| | || || ||| || Sbjct 7063 CGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCGGACTACAACATC 7004 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 7003 CAGAAGGAATCCACCCTTCA-CTTGGTT 6977 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || || || || || | |||||||| Sbjct 7417 AAAATGC---AGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAG 7361 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || |||||||| || || ||||||||||| || || || || || || Sbjct 7360 CCTTCCGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCA 7301 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||| ||||| || ||||| ||||||||| | || ||| |||| Sbjct 7300 GACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGAC 7241 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || ||||| || || || |||| Sbjct 7240 TACAACATCCAGAAGGAATCCACCCTTCA-CTTG 7208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203379266989886