Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1557 168 7e-37 >seq1557 Length=14215200 Score = 168 bits (186), Expect = 7e-37 Identities = 531/814 (65%), Gaps = 18/814 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||||||||| || || || || || ||||| |||||||||| | ||| || || Sbjct 5421683 TTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 5421742 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || | || ||| | |||| || ||| || | |||||||| || | Sbjct 5421743 TTGGTGTTGTAGATCTTTCCAACG--CCCAACTCCACGAGCAAACGGTCCGCTACGAACT 5421800 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || || ||| |||| | ||||| ||||| || || | | || || || || || | Sbjct 5421801 CAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGACGGGCAGGGCATCGG 5421860 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAA---CTCGTTCC 16927 | | || |||||||| | ||||| || || || | | | |||| | Sbjct 5421861 TGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCTCGCGCT 5421920 Query 16928 TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 | || || || | || || | |||||||| || || ||||| || || ||| Sbjct 5421921 TGGGTCGCTGCACC----AGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCC 5421976 Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 ||||| | ||| || ||||| || || ||||| || |||||| || || ||||| Sbjct 5421977 TCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTA 5422036 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | ||| || || | |||||| || ||||| || ||||| |||| ||||| ||| Sbjct 5422037 AGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCGGCAAAGGCG 5422096 Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 || | || || || | | || | ||| | | || |||| | | |||| || || Sbjct 5422097 ATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGA-TCCAGGACAGGGCCCAGTCTGC 5422155 Query 17167 TTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGT 17224 || |||| | || | ||||||||| || || || || | | |||| | ||| Sbjct 5422156 CTTGCGCTTCA--CAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTGT 5422213 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 | || || || || ||||| | | |||||||| || ||||| | |||||||||| Sbjct 5422214 GGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATG 5422273 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGT 17344 || ||||| || ||||| |||||||| || |||| || || || ||| ||| || Sbjct 5422274 GCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGC 5422333 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTA 17404 ||| | || || ||||| |||||||| || |||||||| || |||| | ||| Sbjct 5422334 TCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAGGCCAGCACGTGCGAG 5422393 Query 17405 ATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCC 17464 ||||||| ||||| | || | ||||||| | | || ||||| | |||| Sbjct 5422394 ATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATCC 5422453 Query 17465 ACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 || || ||| |||||| ||| |||| | |||| Sbjct 5422454 ACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 5422487 Score = 100 bits (110), Expect = 3e-16 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||| ||||| || | || |||||||| | |||| |||| || Sbjct 1364746 TTCATGTACCGAACCTTACCGAAGACAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 1364687 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| || || || |||||||| || |||||| | ||| ||| || Sbjct 1364686 CCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCATCCAGACT-GTACTT 1364628 Query 119902 ATCGTTTAAGTAG-ATACAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | |||| || | ||||| || || ||| | |||||||||| | Sbjct 1364627 GTCGTTCA-GTAGGATTGCGTATTCCAACGCCTGCTCCGGTGTCGCTGTCCATTCCAGAA 1364569 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | ||||| ||||||||||| || || | || |||||||| || || || |||| || | Sbjct 1364568 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAGCTGCA 1364509 Query 120021 GTTGTGCGGCGTTCCA 120036 |||| || | |||||| Sbjct 1364508 GTTGCGCCGAGTTCCA 1364493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517450300447080