Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1557 138 1e-27 >seq1557 Length=14215200 Score = 138 bits (152), Expect = 1e-27 Identities = 410/622 (66%), Gaps = 18/622 (3%) Strand=Plus/Plus Query 16037 TCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTAC 16095 || ||||| || || || || || |||| | ||||||||| || || || || | | || Sbjct 5421788 TCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTG-AC 5421846 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 || || || | || | || | || ||||| | ||||| || ||||| ||| | Sbjct 5421847 GGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGAT 5421906 Query 16156 G----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG-CGAAG 16210 | ||||| | || | || || | ||||| | ||||| || |||| | ||| Sbjct 5421907 GATGCGCTCGCGCTTGGGTCGCTGCACC----AGGTGCTGGAACATCAG-CACGGCAAAG 5421961 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 ||||| || | || ||||| | ||| || |||||||| || || || || ||||| Sbjct 5421962 TCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATC 5422021 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCT 16328 || || ||||| | |||||| || | || || || | | ||| ||| || |||| Sbjct 5422022 AGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAAATGCCCT 5422079 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCAT 16387 | || | ||||| ||||| | || ||| || | | || || | || ||||| Sbjct 5422080 CCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGG-ATGAGATCCAG 5422138 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447 | | |||| || || || | || | | ||||||||| || || || |||| Sbjct 5422139 GACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGG 5422198 Query 16448 TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAG 16507 | |||| | || ||| || || || || |||| | ||||||||| || ||| Sbjct 5422199 TACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAG 5422258 Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || | |||||| ||||| ||||| || || ||||||||||| ||||||| || || || Sbjct 5422259 TGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACC 5422318 Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 ||| || || ||| |||||||||| || ||||| || ||| || || || || Sbjct 5422319 TCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAG 5422378 Query 16628 GCCAATATGTGCTTAATGAAAT 16649 |||| | |||| ||||||| Sbjct 5422379 GCCAGCACGTGCGAGATGAAAT 5422400 Score = 105 bits (116), Expect = 7e-18 Identities = 182/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || | ||| || || || | ||||||||||| | |||| |||| || Sbjct 1364746 TTCATGTACCGAACCTTACCGAAGACAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 1364687 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || || || || |||||||| || ||| || | ||| |||||| Sbjct 1364686 CCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCATCCAGACT-GTACTT 1364628 Query 119055 ATCGTTTAAGTAG-ATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| | |||| || | ||||| ||||| ||| |||||||||| | Sbjct 1364627 GTCGTTCA-GTAGGATTGCGTATTCCAACGCCTGCTCCGGTGTCGCTGTCCATTCCAGAA 1364569 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||||||||| || ||| | ||||||||||| |||||| | || ||| | Sbjct 1364568 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAGCTGCA 1364509 Query 119174 GTTGTGCGGTGTTCCATAG 119192 |||| || | |||||| || Sbjct 1364508 GTTGCGCCGAGTTCCACAG 1364490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511320229430920