Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 138 1e-27
>seq1557
Length=14215200
Score = 138 bits (152), Expect = 1e-27
Identities = 410/622 (66%), Gaps = 18/622 (3%)
Strand=Plus/Plus
Query 16037 TCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTAC 16095
|| ||||| || || || || || |||| | ||||||||| || || || || | | ||
Sbjct 5421788 TCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTG-AC 5421846
Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155
|| || || | || | || | || ||||| | ||||| || ||||| ||| |
Sbjct 5421847 GGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCGAT 5421906
Query 16156 G----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG-CGAAG 16210
| ||||| | || | || || | ||||| | ||||| || |||| | |||
Sbjct 5421907 GATGCGCTCGCGCTTGGGTCGCTGCACC----AGGTGCTGGAACATCAG-CACGGCAAAG 5421961
Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270
||||| || | || ||||| | ||| || |||||||| || || || || |||||
Sbjct 5421962 TCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATC 5422021
Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCT 16328
|| || ||||| | |||||| || | || || || | | ||| ||| || ||||
Sbjct 5422022 AGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAAATGCCCT 5422079
Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCAT 16387
| || | ||||| ||||| | || ||| || | | || || | || |||||
Sbjct 5422080 CCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGG-ATGAGATCCAG 5422138
Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447
| | |||| || || || | || | | ||||||||| || || || ||||
Sbjct 5422139 GACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGG 5422198
Query 16448 TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAG 16507
| |||| | || ||| || || || || |||| | ||||||||| || |||
Sbjct 5422199 TACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAG 5422258
Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567
|| | |||||| ||||| ||||| || || ||||||||||| ||||||| || || ||
Sbjct 5422259 TGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACC 5422318
Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627
||| || || ||| |||||||||| || ||||| || ||| || || || ||
Sbjct 5422319 TCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAAG 5422378
Query 16628 GCCAATATGTGCTTAATGAAAT 16649
|||| | |||| |||||||
Sbjct 5422379 GCCAGCACGTGCGAGATGAAAT 5422400
Score = 105 bits (116), Expect = 7e-18
Identities = 182/259 (70%), Gaps = 4/259 (2%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| || | ||| || || || | ||||||||||| | |||| |||| ||
Sbjct 1364746 TTCATGTACCGAACCTTACCGAAGACAGCCCGCTCCTTCCAGCCCATGTCATGGACGCCG 1364687
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054
| | | ||| | || || || || |||||||| || ||| || | ||| ||||||
Sbjct 1364686 CCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCATCCAGACT-GTACTT 1364628
Query 119055 ATCGTTTAAGTAG-ATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113
||||| | |||| || | ||||| ||||| ||| |||||||||| |
Sbjct 1364627 GTCGTTCA-GTAGGATTGCGTATTCCAACGCCTGCTCCGGTGTCGCTGTCCATTCCAGAA 1364569
Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173
| ||||| ||||||||||| || ||| | ||||||||||| |||||| | || ||| |
Sbjct 1364568 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAGCTGCA 1364509
Query 119174 GTTGTGCGGTGTTCCATAG 119192
|||| || | |||||| ||
Sbjct 1364508 GTTGCGCCGAGTTCCACAG 1364490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511320229430920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |