Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1553 107 2e-18 >seq1553 Length=5866729 Score = 107 bits (118), Expect = 2e-18 Identities = 275/412 (67%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||||||||||||||||| ||||| || ||| | || | Sbjct 1125040 GGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCACC 1124981 Query 18849 TGTCAATCAAACTATTTACAGCAAGGA-ATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | ||||| | |||||| ||||| ||||||| || || || || || Sbjct 1124980 TGCGACGATAACTACAG-CGGCAAGGGCATCGACCAGCTGCGCCAAGTGATCGACACCAT 1124922 Query 18908 TAA-AACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | || || ||| | | |||||| || || || ||| |||||||||| ||| |||| Sbjct 1124921 CAGGAATAAGCCCTCAGA-CCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCC 1124863 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT-TGCAA-----ACG 19020 | |||| || || || || ||| || ||||||||||| | | | || Sbjct 1124862 CAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCG 1124803 Query 19021 GTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCA 19080 |||| | || ||||| | ||||||||| | || |||||||| || ||||| || | Sbjct 1124802 GTGAGCTGTCGTGCCAGCTGTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTTA 1124743 Query 19081 ACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCG 19140 |||| || || || || || ||| |||| | || ||||| || || || || | | Sbjct 1124742 ACATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGG 1124683 Query 19141 GAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA 19192 | || || |||| || ||||| ||| |||| | ||| |||| || |||| Sbjct 1124682 GCGACTTTGTTCACACCATGGGCGATACACACGTCTACCTGAACCACGTAGA 1124631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399432275423895