Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1555 282 5e-71 >seq1555 Length=7220098 Score = 282 bits (312), Expect = 5e-71 Identities = 1193/1873 (64%), Gaps = 32/1873 (2%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 5750470 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 5750529 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| |||| |||||| || || || || || ||| | || Sbjct 5750530 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 5750589 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 5750590 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 5750649 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 53034 |||||| || | | ||| || |||||||| | || ||||| | ||||| Sbjct 5750650 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGC----- 5750704 Query 53035 ATCTTCTGG---AAGGTTTGTAT--TCTGAATAGATCCACCATCTACC-ATAATCCTATT 53088 | ||||||| | ||| | || | ||||| ||||| || || || ||| || Sbjct 5750705 ACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGTT 5750763 Query 53089 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 53148 ||| || || || | ||| || | |||||||| | | | | ||| | || || Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| || |||| || ||||| || |||||||| ||||| || || || | | Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943 Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGAT 53327 || | | ||||| |||| | | | || || | | ||| | ||| || | Sbjct 5750944 GGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002 Query 53328 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 53386 || || || || | ||| || || || | | | ||| Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 | || || ||||||| ||||| ||| || ||||| || || || || || || || Sbjct 5751063 -CGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 || |||||||||||||| |||| || ||| | | ||||| ||| || | || Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 ||| ||| || | || || || | |||||||| || ||||| || || || || Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCC 53682 || ||| || || || ||| || ||||| || || ||||||| | || ||| Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCTCC 5751361 Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 | | || |||||||| | || || || |||| || || || || | ||||| | Sbjct 5751362 GGCG-TGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGG 5751420 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 | ||||| | || || ||||| | || || ||||||||||| || | ||| || Sbjct 5751421 TGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTG 5751480 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 || || ||||| |||| || || ||||| | || ||| | || | || || || | Sbjct 5751481 CTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCAC 5751540 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 || | || || || || ||| | | ||||||| | | ||| | | Sbjct 5751541 TTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CCCGA 5751598 Query 53923 TTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT 53980 ||||| |||||| |||| ||| || || || ||||| || | || | Sbjct 5751599 CCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGA 5751658 Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 |||||||| | | || ||||| | |||||| || |||| ||| || |||||||| Sbjct 5751659 CCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATG 5751718 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| || ||||| || || ||| ||||| | | | || || || || || Sbjct 5751719 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCC 5751778 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 || ||||| || || || |||||| | | | ||| || ||||| |||||||| || ||| Sbjct 5751779 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATG 5751838 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || || ||| ||||||||||| | || | || ||||| | Sbjct 5751839 GCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAG 5751898 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || |||| ||| |||| | |||||||| | |||||| || ||| | || || | || Sbjct 5751899 ACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCC 5751958 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | |||||||| | | | ||| || || || || || || || ||||| | | Sbjct 5751959 TTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGG 5752016 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 ||||| ||| | | | | |||||||| || || | ||||| | || || | Sbjct 5752017 CGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGA 5752076 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 |||| |||| || | || | || | || ||| | || || || || |||| Sbjct 5752077 AACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCG 5752136 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 | || | || || || ||||| || || || | || | || |||||| | || Sbjct 5752137 TGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCAT 5752196 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | ||||| | || || ||||| | ||| ||||| |||| || ||||||| |||| Sbjct 5752197 GGATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTC 5752256 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | || || | ||||| |||| || || || ||||||||||| || |||||| | Sbjct 5752257 TCTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTCAC 5752316 Query 54639 GTTCGTAAATAAT 54651 | || || || || Sbjct 5752317 GATCATAGATTAT 5752329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593612273588880