Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1553 228 1e-54 >seq1553 Length=5866729 Score = 228 bits (252), Expect = 1e-54 Identities = 515/764 (67%), Gaps = 30/764 (4%) Strand=Plus/Plus Query 145589 CAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCC---TCAGGATCCTGAGCC 145645 ||||||| || | |||||| || ||||||| |||| | | | | |||| ||| Sbjct 1124530 CAAAGTCTTCGAAGCGGAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATC---AGCT 1124586 Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 |||||||||| || || | | ||| || |||||| ||||| |||||||| |||| Sbjct 1124587 TGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGT 1124646 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 ||||||| | || |||| | ||| | ||||| || |||| || ||||| | |||| Sbjct 1124647 AGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGG 1124706 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 | | ||||| ||| ||||||| |||| ||| ||||| ||||| || ||||| ||||||| Sbjct 1124707 CAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGCCCATGT 1124766 Query 145826 CCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACT 145879 | | | ||||||||||||||| || ||||| |||| | | ||||| |||| Sbjct 1124767 CGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACT 1124826 Query 145880 GGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG 145939 | || | |||||| |||||||||||||| || | |||| ||| ||||| || | Sbjct 1124827 GCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCG 1124886 Query 145940 TGAGGACGA-GCCTCCTGCTCT-CGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAG 145997 | || || || || | ||| ||| || || |||| | |||| | | || Sbjct 1124887 ACATGATGATGCGTC--GGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGGCGCAG 1124944 Query 145998 CTGGTCCACGCCCTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGT 146056 |||||| | ||||| || | ||| | | || | | || ||||| |||||||| | Sbjct 1124945 CTGGTCGATGCCCTTGCCGCTGTAGT-TATCGTCGCAGGTGCCGTACTGCGCCCCGAAAT 1125003 Query 146057 GCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCC--GGGCTC--CCTGTG--CCCCA 146110 ||||||||||||| ||||| || || ||||| || || | ||| || ||| ||||| Sbjct 1125004 GCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGACTCGGCCCGTGAACCCCA 1125063 Query 146111 GCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCG 146170 | | || ||||| || | ||| | ||| | |||||||| | || | ||| Sbjct 1125064 TCTTGTCC------AGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCG 1125117 Query 146171 CGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCC 146230 | ||| |||| |||||| || | |||||| |||||||| || ||| Sbjct 1125118 CCTGCAGCAGTTTGGCGTCCGTCTTGCCTGCCACGAACCACAGCAGCTCCTCTGCCACCG 1125177 Query 146231 CCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGG 146290 | | ||||||| | ||| |||||||| ||||| || | ||||| | | | Sbjct 1125178 CGCGGAAGAAGACACGCTTCGTGGTCAGGAGGGGAAAGGAGTTCCGCATGTCGAAGCGCA 1125237 Query 146291 CCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCC 146334 ||| ||||| |||||||| |||||||| |||| | |||| Sbjct 1125238 TCTGACTGCCGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 1125281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968144733240