Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1553 116 3e-21 seq1555 107 2e-18 seq1556 89.7 4e-13 seq1554 86.0 5e-12 >seq1553 Length=5866729 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | Sbjct 2325485 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2325426 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| |||||||| | || || | |||||| || ||| Sbjct 2325425 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGA 2325366 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | ||| || ||| |||||| Sbjct 2325365 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 2325306 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| || || || ||||| Sbjct 2325305 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259 >seq1555 Length=7220098 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| |||||||||||| |||||||||||||| | Sbjct 5837944 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 5837885 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 5837884 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 5837825 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 5837824 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 5837765 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || | || ||||||||||| || | || || || || || ||||| ||| || Sbjct 5837764 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 5837711 >seq1556 Length=7591821 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | || |||||||| |||||||| || || | Sbjct 3894345 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3894404 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||||||||| |||||||| || | || || | |||||| || ||| Sbjct 3894405 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894464 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || || ||||| Sbjct 3894465 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894524 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || || || || || ||||| Sbjct 3894525 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | || |||||||| |||||||| || || | Sbjct 3895029 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3895088 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||||||||| |||||||| || | || || | |||||| || ||| Sbjct 3895089 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3895148 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || || ||||| Sbjct 3895149 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3895208 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || || || || || ||||| Sbjct 3895209 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255 >seq1554 Length=6179234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | || |||||||| || ||||| ||||| | | Sbjct 592773 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 592714 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| || || || | || | | |||||| || ||| Sbjct 592713 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 592654 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | ||||| ||||| | Sbjct 592653 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACT 592594 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || || || || ||||| Sbjct 592593 TCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| | || |||| ||| | || |||||||| || ||||| ||||| | ||| || Sbjct 592538 GCAGACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGC 592479 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTT 21075 | ||||||||| ||| || || || | || | | |||||| || ||| | || | Sbjct 592478 GTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCT 592419 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG 21135 ||||||| |||||| || || | ||| ||||| ||||| |||| | Sbjct 592418 CCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAG 592359 Query 21136 TAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | |||||||||||||| | || || || || |||||||| ||| Sbjct 592358 TGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 592315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422183390090396