Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1557 107 4e-18 >seq1557 Length=14215200 Score = 107 bits (118), Expect = 4e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || | ||| ||||| ||||| | || ||||||||||| | ||||| || Sbjct 1364490 CTGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGC 1364549 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTAT 189568 ||||| ||||| || ||||| || |||||||| ||||| || | || ||| || Sbjct 1364550 ATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCAGGCGTTGGAATAC 1364609 Query 189569 AGTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGG 189627 ||| ||||| |||||||| || || || ||| || || ||||| || || || Sbjct 1364610 GCAATCCTACTGAACGACAAGTACAGTCTGGATGG-ACGCGACCCCAACGGCTATGTCGG 1364668 Query 189628 TTGTATGTGGTCTATTTGCGG 189648 ||| |||||||| ||| |||| Sbjct 1364669 TTGCATGTGGTCCATTGGCGG 1364689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923026804849240