Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1555 98.7 2e-15 >seq1555 Length=7220098 Score = 98.7 bits (108), Expect = 2e-15 Identities = 417/643 (65%), Gaps = 27/643 (4%) Strand=Plus/Minus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 || ||||| ||||||||| |||||| | ||| | || ||||||||||| |||| ||| Sbjct 5751843 TTTGCCATTTATTTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG 5751784 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 |||| ||||| || | | || || || || || |||| ||||||| | |||| Sbjct 5751783 AACACGGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGAT 5751724 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCC 249456 | |||||| ||||| ||||| |||| |||||| |||| | | || | | Sbjct 5751723 CTCTTCATGAAACGCGTTGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGT 5751664 Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATC 249515 || | ||| ||| | |||| || ||||| |||| || |||||||||| Sbjct 5751663 CCTGGTCTCCACGAAGTGTGGGGCGATGAATTCGA-AAAGCTGTACGAGAAATACGA--G 5751607 Query 249516 CAACGGCATCGG--CAA---GACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTG 249567 ||| | |||| ||| || | ||||||| |||| ||||| | | | Sbjct 5751606 CAAGAGGGTCGGGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGTTTGCCA---TCATT 5751550 Query 249568 GAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAG 249627 ||| | || | ||||| || ||||| | ||||| ||||| |||||| ||| Sbjct 5751549 GAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAG 5751490 Query 249628 AGTAACCAACGGCATCTTGGTACCATC-CGCTCGTCAAATCTCTGTGCA--GAGGTGATT 249684 || ||||| | | || | || |||||| | | ||| | |||||| || | || Sbjct 5751489 AGCAACCAGCAGAATGTGGGCACCATCAAGTGCAGCAACT---TGTGCACGGAAATCGTT 5751433 Query 249685 CAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGG 249744 |||| || || ||| |||||||| ||||||||| |||| |||| ||| | | Sbjct 5751432 GAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATG 5751373 Query 249745 CACGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACG--GCGAAACAGG 249802 ||| | | |||| | ||||| || || || | ||| ||| | | || | Sbjct 5751372 TTCGTCACGCCGGAGAAGACGTATGATTTTAAGAAGC-TCA-AGGAAGTCACCAAGATAG 5751315 Query 249803 CGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGAATGCAGGT 249862 | |||||| || |||||| | |||||| |||| | ||| ||||| ||| ||| Sbjct 5751314 TTACCAAAAATCTAAACAAGATAATTGATATCAACTATTATCCCCTGCCGGAGGCAAGGA 5751255 Query 249863 TGTCCAACATGAAGCACCGTCCATGTGGGC-TGGGCGTTCAGG 249904 |||||| ||| ||||||||| |||||| | || |||||| Sbjct 5751254 AGTCCAATTTGAGGCACCGTCC-CGTGGGCATTGGTATTCAGG 5751213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073563736323008