Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1554 131 1e-25 seq1556 116 3e-21 seq1553 111 1e-19 >seq1554 Length=6179234 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 592983 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592924 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| || || || || | |||||||||||| Sbjct 592923 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592864 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| || |||| ||| || |||||| Sbjct 592863 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592804 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 592803 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592774 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 593211 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 593152 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| || || || || | |||||||||||| Sbjct 593151 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 593092 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| || |||| ||| || |||||| Sbjct 593091 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 593032 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 593031 CCAGTCAGAGTCTTCACGAAGATCTGCATG 593002 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 592755 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592696 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| ||||| || || || || | || ||||||||| Sbjct 592695 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 592636 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| || |||| ||| || |||||| Sbjct 592635 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592576 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| ||||| |||||| Sbjct 592575 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592546 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592468 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| ||||| ||||| || || || || | |||||||||||| Sbjct 592467 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592408 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| ||||||| || || |||||| Sbjct 592407 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 592348 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || ||||||||||| || || |||||||| ||| || Sbjct 592347 CCGGTCAGAGTCTTAACGAAAATTTGCATATTGGCT 592312 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCC-TTCTGAATGTTGTAGTCG 45166 ||||||| | || | || |||||||| || || |||| ||||| |||||||||||| Sbjct 594300 CGCCACCACGCAGACGCAAGACCAAGTGAAGGGTCGACTCCCTTCTGGATGTTGTAGTCG 594241 Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 ||| ||| |||| ||||| || ||||||||||| ||||| ||||| || || || Sbjct 594240 GACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGG- 594182 Query 45227 GGCACACCCTCCTTGTCC 45244 || | |||||| ||||| Sbjct 594181 GGGAATCCCTCC-TGTCC 594165 >seq1556 Length=7591821 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| ||| || ||| |||| ||| Sbjct 3894363 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCC 3894422 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| |||||||| || | ||||| || || || || | ||||||||||| Sbjct 3894423 AGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 3894482 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||| ||||||| || || |||||| Sbjct 3894483 ATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894542 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 3894543 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| ||| || ||| |||| ||| Sbjct 3895047 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCC 3895106 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| |||||||| || | ||||| || || || || | ||||||||||| Sbjct 3895107 AGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 3895166 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||| ||||||| || || |||||| Sbjct 3895167 ATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3895226 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 3895227 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||| ||| || ||| |||| ||| Sbjct 3894819 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCC 3894878 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| |||||||| || | ||||| || || || || | |||||||| ||| | Sbjct 3894879 AGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3894938 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||| ||||||| || || |||||| Sbjct 3894939 ATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894998 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 3894999 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3895027 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || ||| ||| | || || Sbjct 3895275 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCA 3895334 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| || || || || | |||||||| ||| | Sbjct 3895335 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 3895394 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | | |||| ||| ||||| | ||| || ||||| Sbjct 3895395 ATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTTT 3895454 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| |||||||||||||| ||||| ||| Sbjct 3895455 CCGGTCAAGGTCTTCACAAAGATCTGCATTTTG 3895487 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| ||| ||| ||| |||| ||| Sbjct 3893223 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3893282 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || ||||| |||| ||||| || || || || | ||||||||||| Sbjct 3893283 AATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3893342 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | ||||| ||| ||||||| || || |||||| Sbjct 3893343 ATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3893402 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 3893403 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| ||| ||| ||| |||| ||| Sbjct 3893907 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3893966 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || ||||| |||| ||||| || || || || | ||||||||||| Sbjct 3893967 AATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3894026 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | ||||| ||| ||||||| || || |||||| Sbjct 3894027 ATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894086 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 3894087 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || ||| ||| | || || Sbjct 3894591 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCA 3894650 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| || || || || | |||||||| ||| | Sbjct 3894651 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 3894710 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | | | || | ||| ||||| | ||| || ||||| Sbjct 3894711 ATCTTAGCCTTAACATTCTCAATGGTATCAGAAGGCTCTACCTCGAGGGTGATAGTCTTT 3894770 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| ||||| ||||| Sbjct 3894771 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3894799 >seq1553 Length=5866729 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| || ||| | || ||| Sbjct 2325467 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCC 2325408 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| || || || || | |||||||| ||| Sbjct 2325407 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 2325348 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 2325347 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 2325288 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| ||||| Sbjct 2325287 CCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395004270544351