Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1554 131 1e-25
seq1556 116 3e-21
seq1553 111 1e-19
>seq1554
Length=6179234
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 592983 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592924
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 592923 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592864
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| || |||| ||| || ||||||
Sbjct 592863 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592804
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||||||||| ||||| ||||||
Sbjct 592803 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592774
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 593211 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 593152
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 593151 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 593092
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| || |||| ||| || ||||||
Sbjct 593091 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 593032
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||||||||| ||||| ||||||
Sbjct 593031 CCAGTCAGAGTCTTCACGAAGATCTGCATG 593002
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 592755 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592696
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||| ||||| || || || || | || |||||||||
Sbjct 592695 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 592636
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| || |||| ||| || ||||||
Sbjct 592635 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592576
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||||||||| ||||| ||||||
Sbjct 592575 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592546
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592468
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || ||||||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 592467 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592408
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| ||||||| || || ||||||
Sbjct 592407 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 592348
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
|| ||||||||||| || || |||||||| ||| ||
Sbjct 592347 CCGGTCAGAGTCTTAACGAAAATTTGCATATTGGCT 592312
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCC-TTCTGAATGTTGTAGTCG 45166
||||||| | || | || |||||||| || || |||| ||||| ||||||||||||
Sbjct 594300 CGCCACCACGCAGACGCAAGACCAAGTGAAGGGTCGACTCCCTTCTGGATGTTGTAGTCG 594241
Query 45167 TTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226
||| ||| |||| ||||| || ||||||||||| ||||| ||||| || || ||
Sbjct 594240 GACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGG- 594182
Query 45227 GGCACACCCTCCTTGTCC 45244
|| | |||||| |||||
Sbjct 594181 GGGAATCCCTCC-TGTCC 594165
>seq1556
Length=7591821
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||| ||| || ||| |||| |||
Sbjct 3894363 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCC 3894422
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| |||||||| || | ||||| || || || || | |||||||||||
Sbjct 3894423 AGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 3894482
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||||| || || ||||||
Sbjct 3894483 ATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894542
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||| ||||| |||||
Sbjct 3894543 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||| ||| || ||| |||| |||
Sbjct 3895047 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCC 3895106
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| |||||||| || | ||||| || || || || | |||||||||||
Sbjct 3895107 AGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGG 3895166
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||||| || || ||||||
Sbjct 3895167 ATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3895226
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||| ||||| |||||
Sbjct 3895227 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||| ||| || ||| |||| |||
Sbjct 3894819 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCC 3894878
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| |||||||| || | ||||| || || || || | |||||||| ||| |
Sbjct 3894879 AGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3894938
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||||| || || ||||||
Sbjct 3894939 ATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894998
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||| ||||| |||||
Sbjct 3894999 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3895027
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||| || ||| ||| | || ||
Sbjct 3895275 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCA 3895334
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| |||| ||||| || || || || | |||||||| ||| |
Sbjct 3895335 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 3895394
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || |||||| | | | | |||| ||| ||||| | ||| || |||||
Sbjct 3895395 ATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTTT 3895454
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| |||| |||||||||||||| ||||| |||
Sbjct 3895455 CCGGTCAAGGTCTTCACAAAGATCTGCATTTTG 3895487
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| |||||||| ||| ||| ||| |||| |||
Sbjct 3893223 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3893282
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| ||| || || ||||| |||| ||||| || || || || | |||||||||||
Sbjct 3893283 AATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3893342
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||| || | | | | ||||| ||| ||||||| || || ||||||
Sbjct 3893343 ATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3893402
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||| ||||| |||||
Sbjct 3893403 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| |||||||| ||| ||| ||| |||| |||
Sbjct 3893907 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3893966
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| ||| || || ||||| |||| ||||| || || || || | |||||||||||
Sbjct 3893967 AATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3894026
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||| || | | | | ||||| ||| ||||||| || || ||||||
Sbjct 3894027 ATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894086
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||| ||||| |||||
Sbjct 3894087 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||| || ||| ||| | || ||
Sbjct 3894591 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCA 3894650
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| |||| ||||| || || || || | |||||||| ||| |
Sbjct 3894651 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 3894710
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || |||||| | | | | | || | ||| ||||| | ||| || |||||
Sbjct 3894711 ATCTTAGCCTTAACATTCTCAATGGTATCAGAAGGCTCTACCTCGAGGGTGATAGTCTTT 3894770
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||||||| ||||| |||||
Sbjct 3894771 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3894799
>seq1553
Length=5866729
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| |||||||||||| || ||| | || |||
Sbjct 2325467 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCC 2325408
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| || || || || | |||||||| |||
Sbjct 2325407 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 2325348
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||||||||||| ||| || ||||||
Sbjct 2325347 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 2325288
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || || ||||| ||||| |||||
Sbjct 2325287 CCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395004270544351
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