Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1557 105 1e-17 seq1555 89.7 1e-12 >seq1557 Length=14215200 Score = 105 bits (116), Expect = 1e-17 Identities = 289/438 (66%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || || || || ||||| || || ||||| |||||||||||| | Sbjct 5422095 GCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTT 5422036 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | ||||||| | |||| |||||| ||| | || ||| | ||||| Sbjct 5422035 AAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGAG 5421976 Query 102041 GGTCTTCATCGCGACTTTG-CATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATC 102099 || | || ||||||||| | ||| || |||| | | | || | |||| | | Sbjct 5421975 GGCTTGCACTGCGACTTTGCCGTGC-TGATGTTCCAGCA-CCTGGTGCAGCGACCCAAGC 5421918 Query 102100 AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 | || | || | || || || || || || || || || || || ||||| Sbjct 5421917 --GCGAGCGCATCATCGAGATCATCCGCGACGCGGTGGCCATAGAGCAGGAGTTCCTCAC 5421860 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | | ||||||| || || || | || ||||| ||| | ||||| |||||||||||| Sbjct 5421859 CGATGCCCTGCCCGTCAATTTGATCGGCATGAATTGCGACCTGATGTCCCAGTACATTGA 5421800 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 || || || || | | || || |||| | | |||| ||| || | || Sbjct 5421799 GTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAAAA 5421740 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 ||| || |||||||| | || || || || |||||||||||||| || |||| Sbjct 5421739 CCCATTTAACTTCATGGAGATGATATCGCTGGACGGAAAGACCAACTTTTTCGAGAAGAA 5421680 Query 102340 AGTCGCCGAGTATCAACG 102357 || || ||||| || || Sbjct 5421679 GGTGGCGGAGTACCAGCG 5421662 >seq1555 Length=7220098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 93570 GTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGG 93629 ||| ||||| |||||| || || || || || | || ||||| | || | || Sbjct 5750818 GTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGG 5750877 Query 93630 CTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAAC 93689 ||| ||||||||| |||||||| ||||| || || |||||||| |||||||||||||| Sbjct 5750878 CTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAAC 5750937 Query 93690 AAACATTGAATTGTGAACACCATACTTCATAATGTCCCTTCTCAATTGCTCCCAATC 93746 | || || || | ||||| | |||| ||||| | |||||| || ||| || Sbjct 5750938 GAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTC 5750994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989397224988105