Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1555 271 1e-67 seq1557 170 2e-37 >seq1555 Length=7220098 Score = 271 bits (300), Expect = 1e-67 Identities = 1198/1885 (64%), Gaps = 30/1885 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 5750470 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 5750529 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| |||||| || || || || || ||| | || Sbjct 5750530 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 5750589 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 5750590 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 5750649 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA---AACTCGCTTAAT 62272 |||||| || | | ||| || |||||||| | || ||||| | ||||| Sbjct 5750650 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGC----- 5750704 Query 62273 ATCTTCT---GGAAGGTTT--GTATTCTGAATGGATCCACCATCT-ACCATAATCCTATT 62326 | ||||| ||| ||| | | || ||||| ||||| || || || ||| || Sbjct 5750705 ACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGTT 5750763 Query 62327 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386 ||| || || || | ||| || | |||||||| | | | | ||| |||| || Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 || |||||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| || |||| || ||||| || |||||||| ||||| || || || | | Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGATGTTCCCAATTCCAAAGAT 62565 || | | ||||| |||| | | | || || | | | ||| | ||| || | Sbjct 5750944 GGAGTTCCGGACACCGT-GCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002 Query 62566 CCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACT-GGCGTACGATCCT 62624 || || || || || | ||| || || || || | ||| Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 | || || || |||| ||||| ||| || |||| || || || || || || || Sbjct 5751063 -CGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 || ||||||||||| || |||| || ||| | | ||||| ||| || | || Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 ||| ||| || | || || || | |||||||| || ||||| || || || || Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62924 |||||| || || || ||| || ||||| || || ||||||| | || | ||| Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATA-CG-TCTTCT 5751359 Query 62925 -----ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979 | || |||||||| | || | || |||| || || || || | ||||| | Sbjct 5751360 CCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCG 5751419 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 | ||||| | || || ||||| | || || |||||||| || || | ||| | Sbjct 5751420 GTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCT 5751479 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 | || || ||||| |||| || || ||||| | || ||| | ||| | || || || | Sbjct 5751480 GCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCA 5751539 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCC 63159 || | || || || || ||| | | | ||||||| | | ||| | | Sbjct 5751540 CTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGAC 5751599 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 ||| |||||| |||| |||||| || || ||||| || | || | | Sbjct 5751600 CCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGAC 5751659 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 |||||| | | || ||||| | |||||| || |||| ||| || |||||||| | Sbjct 5751660 CAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGA 5751719 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||| || ||||| || || ||| ||||| | || | || || || || || | Sbjct 5751720 AGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCG 5751779 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 | ||||| || || || |||||| | | | ||| || ||||| |||||||| || |||| Sbjct 5751780 TGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGG 5751839 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || || || ||| ||||||||||| | || | || ||||| | | Sbjct 5751840 CAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGA 5751899 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | |||| ||| |||| | || || || ||||||| || ||| | || || || Sbjct 5751900 CCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCT 5751959 Query 63520 TGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | |||||||| | | | ||| || || || || || || || ||||| | || Sbjct 5751960 TTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGC 5752017 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 |||| ||| | | | | ||||| || ||| || | ||||| | || || || Sbjct 5752018 GCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAA 5752077 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||| |||| || | || | || | || ||| | || || || || ||||| Sbjct 5752078 ACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGT 5752137 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || | || || || ||||| || || || | || | || |||||| | ||| Sbjct 5752138 GAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATG 5752197 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 ||||| | || || ||||| | ||| ||||| |||| || | || || |||| | Sbjct 5752198 GATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCT 5752257 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 || | | ||||| |||| || || || ||||||||||| || |||||| || Sbjct 5752258 CTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTCACG 5752317 Query 63878 TTCGTAAATAATAACCGAATTGAGC 63902 || || || || ||| || ||| Sbjct 5752318 ATCATAGATTATGGACGAGTTCAGC 5752342 >seq1557 Length=14215200 Score = 170 bits (188), Expect = 2e-37 Identities = 540/835 (65%), Gaps = 3/835 (0%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| ||||| || |||| || |||||||| || || ||||| |||| Sbjct 5421653 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC 5421712 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 ||||| | |||||||| | ||| || || | ||||| || ||| || ||||| Sbjct 5421713 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 5421772 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | ||| | || || ||||| || || || ||||| || |||||||| Sbjct 5421773 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATG 5421832 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | || || || || || | || || || || || || |||| ||||| | Sbjct 5421833 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCG 5421892 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || || | | | || | ||| | || | | || | ||||||| Sbjct 5421893 CGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGC 5421952 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||||||| |||||||| | | || | ||||| || || || | | Sbjct 5421953 ACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAAT 5422012 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| |||||||| || ||||| ||||| ||| ||||| Sbjct 5422013 CCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAA 5422072 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGT- 33758 || || || || || |||||||| || | | ||| || || ||| || ||| Sbjct 5422073 ATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAG 5422132 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||| || ||| ||||||||||| || || || Sbjct 5422133 ATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTG 5422192 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | | | | ||| | ||||| |||||||||| ||| ||||| Sbjct 5422193 AACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATC 5422252 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || | ||| || ||||| ||||| || |||||||| |||| ||||| || ||| Sbjct 5422253 TCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATC 5422312 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 ||||| || || || || || | | || || || || || |||||| ||| || Sbjct 5422313 TGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCG 5422372 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || |||| || || || |||| ||||| | || | ||| ||| Sbjct 5422373 AAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCA 5422432 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || || || | |||||| || || || ||||| || || ||||| |||| Sbjct 5422433 GTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 5422487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629701626961680