Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1555 120 3e-22 >seq1555 Length=7220098 Score = 120 bits (132), Expect = 3e-22 Identities = 512/804 (64%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882 || || | || ||| |||||||| ||||| || || | |||| |||||| || || Sbjct 5750507 TTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATG 5750566 Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942 ||||| ||| | || | || | | | || ||| | | || ||||| |||||| Sbjct 5750567 GAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCT 5750626 Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002 || |||||||| | ||||| ||||||| | | | || || || ||||| ||| Sbjct 5750627 ATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACC 5750686 Query 37003 GTTTTATATATTTGTTTTATATTATCTGGTAAA-TCTAAATGTT--GAATAGAACCATTA 37059 || ||||| | | | | || | || | ||| |||||| |||| || || | Sbjct 5750687 GTCTTATACAGATCTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTG 5750746 Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCT 37118 | | || ||||| ||||| | | ||||| | | | || |||| || | Sbjct 5750747 CTGGATATGATCTGGTTCTTCATGTCGTCGTCCCACA-AGTCCAGCTCGGTTAGGTCGCG 5750805 Query 37119 CAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATT 37178 ||| | || | || || ||||| || || || || | |||| | || ||||| || Sbjct 5750806 CAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTT 5750865 Query 37179 GCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGG 37238 | || || || || | ||| ||||| || | | ||| |||| ||||||||||| || Sbjct 5750866 CGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGG 5750925 Query 37239 CATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTC 37298 ||| || || | || ||| || | | || || | ||||| || || | || Sbjct 5750926 CATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTT 5750985 Query 37299 ATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTT 37358 | ||| ||||| | | ||||| ||| |||||| || || || | ||| ||||| Sbjct 5750986 CTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTT 5751045 Query 37359 ACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT 37418 ||| | || | | || || || || | || | | | || |||||||| || Sbjct 5751046 GCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCT 5751105 Query 37419 AGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478 | ||| | ||| |||| || || |||||||| || || ||| || | ||||| Sbjct 5751106 GGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTC 5751165 Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538 |||||| ||| | | | | || | || || ||||||| || ||||||| ||| || Sbjct 5751166 TTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAAT 5751225 Query 37539 ACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGAT 37598 || | ||| | || || ||| || | | || || |||||||| ||||| Sbjct 5751226 GCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGAT 5751285 Query 37599 ATCTATTATTTTATTTAGATTTTT 37622 ||| ||||| || ||||||||||| Sbjct 5751286 ATCAATTATCTTGTTTAGATTTTT 5751309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468438527014640