Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 120 3e-22
>seq1555
Length=7220098
Score = 120 bits (132), Expect = 3e-22
Identities = 512/804 (64%), Gaps = 5/804 (1%)
Strand=Plus/Plus
Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882
|| || | || ||| |||||||| ||||| || || | |||| |||||| || ||
Sbjct 5750507 TTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATG 5750566
Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942
||||| ||| | || | || | | | || ||| | | || ||||| ||||||
Sbjct 5750567 GAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCT 5750626
Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002
|| |||||||| | ||||| ||||||| | | | || || || ||||| |||
Sbjct 5750627 ATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACC 5750686
Query 37003 GTTTTATATATTTGTTTTATATTATCTGGTAAA-TCTAAATGTT--GAATAGAACCATTA 37059
|| ||||| | | | | || | || | ||| |||||| |||| || || |
Sbjct 5750687 GTCTTATACAGATCTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTG 5750746
Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCT 37118
| | || ||||| ||||| | | ||||| | | | || |||| || |
Sbjct 5750747 CTGGATATGATCTGGTTCTTCATGTCGTCGTCCCACA-AGTCCAGCTCGGTTAGGTCGCG 5750805
Query 37119 CAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATT 37178
||| | || | || || ||||| || || || || | |||| | || ||||| ||
Sbjct 5750806 CAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTT 5750865
Query 37179 GCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGG 37238
| || || || || | ||| ||||| || | | ||| |||| ||||||||||| ||
Sbjct 5750866 CGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGG 5750925
Query 37239 CATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTC 37298
||| || || | || ||| || | | || || | ||||| || || | ||
Sbjct 5750926 CATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTT 5750985
Query 37299 ATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTT 37358
| ||| ||||| | | ||||| ||| |||||| || || || | ||| |||||
Sbjct 5750986 CTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTT 5751045
Query 37359 ACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT 37418
||| | || | | || || || || | || | | | || |||||||| ||
Sbjct 5751046 GCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCT 5751105
Query 37419 AGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478
| ||| | ||| |||| || || |||||||| || || ||| || | |||||
Sbjct 5751106 GGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTC 5751165
Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538
|||||| ||| | | | | || | || || ||||||| || ||||||| ||| ||
Sbjct 5751166 TTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAAT 5751225
Query 37539 ACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGAT 37598
|| | ||| | || || ||| || | | || || |||||||| |||||
Sbjct 5751226 GCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGAT 5751285
Query 37599 ATCTATTATTTTATTTAGATTTTT 37622
||| ||||| || |||||||||||
Sbjct 5751286 ATCAATTATCTTGTTTAGATTTTT 5751309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468438527014640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |